PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004541-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HD-ZIP

Protein Properties

Length: 203aa MW: 23240.9 Da PI: 4.5557

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004541-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	32	84	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ Fe++ ++ +++ + A++lgL+ rqV +WFqN+Ra++k AUR62004541-RA 32 KRRFTDEQVKSLESIFENETKLEPKKKVQVARELGLQPRQVAIWFQNKRARYK 84 568*************************************************9 PP
2	HD-ZIP_I/II	118.8	2.9e-38	31	117	2	88
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +krr+++eqvk+LE+ Fe+e+kLep++Kv++areLglqprqva+WFqn+RAR+k+kqlEk+y++Lk++y++l+++ e L+ke+++L AUR62004541-RA 31 NKRRFTDEQVKSLESIFENETKLEPKKKVQVARELGLQPRQVAIWFQNKRARYKSKQLEKEYSTLKSNYNSLAKRFEDLKKEKQSLV 117 69**********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MMFDDGDYYS PSDVFSCINS LPNSKKSKMM NKRRFTDEQV KSLESIFENE TKLEPKKKVQ 60 VARELGLQPR QVAIWFQNKR ARYKSKQLEK EYSTLKSNYN SLAKRFEDLK KEKQSLVLQS 120 NECEAKPALS LEGSEYGACS ILSDEGSSEN TNYFGMEEEA DILTMVQPVD GSLTSGEGWD 180 DLRPDGLFDQ AVDSCQWWDF WS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	1e-50	HD-ZIP family protein