PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62004506-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 658aa    MW: 73477.6 Da    PI: 6.4186
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62004506-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.2e-23120220198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD +vF +   +++
  AUR62004506-RA 120 FVKILTASDTSTHGGFSVLRKHANEClppldMSQPTPTQELVATDLHGYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLAAGDAFVFLR--GDNG 212
                     89*****************************77777888*************************************************3..3777 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                      l+v+v+r
  AUR62004506-RA 213 DLRVGVRR 220
                     78**9998 PP
2Auxin_resp104.21.6e-34246325183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha++t+++F+v+Y+Pr+  s+F+v v+k+++a+++k+s+GmRf m+fe++d +err++Gt+vgv+d++p +W++SkWrsLk
  AUR62004506-RA 246 ARHAVNTSTMFTVYYKPRS--SQFIVGVNKYLEAVNHKFSIGMRFDMKFEGDDTPERRFTGTIVGVEDVSP-QWSGSKWRSLK 325
                     679***************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    
MARRQAVPGV GNEALYRELW RACAGPLVDV PQPGERVFYF PQGHMEQLEA TTNQELNQQI  60
PRFNLPSKIL CQVVNIELKA EPETDEVYAQ IALIPEKEQD ELISSDSSVN EPPRPKVQSF  120
VKILTASDTS THGGFSVLRK HANECLPPLD MSQPTPTQEL VATDLHGYEW HFKHIFRGQP  180
RRHLLTTGWS TFVTSKRLAA GDAFVFLRGD NGDLRVGVRR LVRQQSPMPP SVISSQSMHL  240
GVLATARHAV NTSTMFTVYY KPRSSQFIVG VNKYLEAVNH KFSIGMRFDM KFEGDDTPER  300
RFTGTIVGVE DVSPQWSGSK WRSLKVQWDE AAAFHRPDKV SPWEIEPFVA SIPANPSPPL  360
VSKTKRSRPS DLSISETAGG SPVSNFWYVS AHTNDFNSPR NQQDNAWSPN HARNSPRFFV  420
DKKDDSKAPS VQSCSTPSAY SYLAPSRLRP DHHSEQVNNG GKSPGSCRLF GIELRNNSHV  480
VPSLEKVTVC PEKLSNEGKI TETGAGKVDE VQNTDVEPLK EQNQVNSDVS QDESLTLTKT  540
FSQSSTRSTT KVQMQGVAVG RAVDLTILEG YDELICELEK MFDIKGELKT RNKWAVVFTD  600
DEDDMMLVGD DPWQEFCKMV RKIFIYSSEE VKKLSCKSRL SSPSVDEGTV LSLGTEE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0ARF family protein