PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004272-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 265aa MW: 30034 Da PI: 7.7142

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004272-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.3	1.1e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKKA+ELS+LCdae+a+i+fs++gklye+ss AUR62004272-RA 9 KRIENNISRQVTFSKRRAGLLKKAKELSILCDAEIALIVFSPRGKLYEFSS 59 79***********************************************96 PP
2	K-box	83	6.6e-28	87	175	9	97
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + e +++s+ qe+a+L++++e Lqr +R++lGe+L+ Lslk+Lq+Le+qLe +l + R++K +l++eq+e l++ e++l + nk+L+ + AUR62004272-RA 87 AIEVQTQSWLQEIANLESQYEILQRAHRQMLGEELGILSLKDLQSLEKQLEGALARTRARKAQLMTEQMEALRRSERKLGDLNKELKLR 175 456789*******************************************************************************9865 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MGRGKVELKR IENNISRQVT FSKRRAGLLK KAKELSILCD AEIALIVFSP RGKLYEFSSI 60 DCLPKTLERY QRSGNTIDLH HHHQDHAIEV QTQSWLQEIA NLESQYEILQ RAHRQMLGEE 120 LGILSLKDLQ SLEKQLEGAL ARTRARKAQL MTEQMEALRR SERKLGDLNK ELKLRVGDQG 180 HGFRPMDLNS NGCIQFIHPS QSTNFEYDPA VLQIGSYKPE PVVLDYIGYP PQYASHEDEG 240 PSNGSQRASL GSDTTNFHQA GWLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	ARTRARKAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-74	MIKC_MADS family protein