PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62004045-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 486aa    MW: 52826.5 Da    PI: 4.4276
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62004045-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.31.1e-9217147714327
            GRAS  14 sgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108
                     ++d e+a + L rl++ +s++gdp+qR+++yfteAL+ rl+     l++++  +++    s+e + ++k++++++P+ kf+hltaNqaIlea++g
  AUR62004045-RA 171 ASDPERAVKSLVRLRDSVSQHGDPIQRVVFYFTEALSCRLSP---PLSSSIVETTA----SEECTLSYKALNDACPFSKFAHLTANQAILEATDG 258
                     45889999*********************************9...56655555554....5799999**************************** PP

            GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                     +e++Hi+Df+i qG+QW+aLlqaLa+Rp g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ v + +++l+ +++rv+p+E
  AUR62004045-RA 259 AEKIHIVDFGIVQGVQWAALLQALATRPTGKPnKIRISGIPAPALGesPASALFATGNRLREFAKVLELNFEFEP-VLTPIHELTESNFRVDPDE 352
                     ****************************66665**********99998999************************.799**************** PP

            GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                     +l Vn++lql++llde++   +   + Lkl ksl+Pk+v++ e e+ +n+  +l+rf  a++yys++f+sle +l r+s +r+ vEr ++gr+i+
  AUR62004045-RA 353 VLTVNFMLQLYNLLDETTIEVE---AALKLAKSLNPKIVTLGEYEVGLNRVGYLTRFKTAIKYYSSVFESLEPNLDRDSVDRVQVERLIFGRRIM 444
                     **************77665555...9********************************************************************* PP

            GRAS 296 nvvacegae.rrerhetlekWrerleeaGFkpv 327
                       v  e    rrer+e +e+W+  +e+aGF+p+
  AUR62004045-RA 445 GSVGPELPGtRRERMECKEEWKGLMENAGFEPA 477
                     ******8766*********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MSTSPPPPLG FSAGGPPFHD PFQVGPPPPD ANEPWLDHTS TTSFRFADFC DGAPGEFDSD  60
EWMESLMSAG GGAVEAGNND GSNLQSACDA WQGVSGAADF SLYGGVNADP FATCPNRINV  120
AISPPSDLTR VIYSDADKTV TTQPWVPPSP PLKDPQSQPL EPPQTQNDAV ASDPERAVKS  180
LVRLRDSVSQ HGDPIQRVVF YFTEALSCRL SPPLSSSIVE TTASEECTLS YKALNDACPF  240
SKFAHLTANQ AILEATDGAE KIHIVDFGIV QGVQWAALLQ ALATRPTGKP NKIRISGIPA  300
PALGESPASA LFATGNRLRE FAKVLELNFE FEPVLTPIHE LTESNFRVDP DEVLTVNFML  360
QLYNLLDETT IEVEAALKLA KSLNPKIVTL GEYEVGLNRV GYLTRFKTAI KYYSSVFESL  420
EPNLDRDSVD RVQVERLIFG RRIMGSVGPE LPGTRRERME CKEEWKGLME NAGFEPARNC  480
PIIQV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-165GRAS family protein