PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62004030-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GRF

Protein Properties

Length: 571aa MW: 61476.6 Da PI: 8.1234

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62004030-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	195	238	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e AUR62004030-RA 195 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 238 79***************************************998 PP
2	QLQ	60.4	5e-21	125	161	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT+aQ+ +L++Q+++yKy+ an+PvP++Ll +i+k AUR62004030-RA 125 GPFTPAQWIELEHQAMIYKYITANVPVPANLLIPIRK 161 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MDFDGLVVGQ SAVSSSCSDH QNQILEGKPK CSINGSGLIK QERSDPFVDE DRVAKIVKRA 60 DDLGLRSDNA VPKQQMLSFS SSTKPQQLSF LNAKDGCFDL DFRRWGFNNG NLNGSMHGSF 120 SGIRGPFTPA QWIELEHQAM IYKYITANVP VPANLLIPIR KALCSSGFPG FSFGSYPPHS 180 YGWGTFHLGF SGSTDPEPGR CRRTDGKKWR CSRDAVPDQK YCERHINRGR HRSRKPVEGH 240 TGQAASGPTN TKVVPAMSSS MSSLVTSTGG ASNSTVTIAH QHHIKGLQPT GANNAAADSI 300 VNRFHVEQGL SAMPPTMNLK TNDSPFSIAK QHIQLDDSSQ SEFGLVSTDS LLNPTQKSAY 360 LGCKSYSSSI LEFNAQQTQD QYPLRHFMDV WPKDNSNRSS IPWPEDSLKS DWTQLSMSIP 420 MSTSDFSSSS SPNQEKATIS PLRLSRELDP SQMGVGVGTI VGETGMKQNA WIPISWGNSS 480 MGGPLGEVLN NTSIITSALN LKGDQRCDGS PQLGSSPTGV LQKSTFVSLS NSSSAGSPRA 540 ENKKTLEGAS LCDDILGSAA HASSTFVPSM *

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MDFDGLVVGQ SAVSSSCSDH QNQILEGKPK CSINGSGLIK QERSDPFVDE DRVAKIVKRA  60
DDLGLRSDNA VPKQQMLSFS SSTKPQQLSF LNAKDGCFDL DFRRWGFNNG NLNGSMHGSF  120
SGIRGPFTPA QWIELEHQAM IYKYITANVP VPANLLIPIR KALCSSGFPG FSFGSYPPHS  180
YGWGTFHLGF SGSTDPEPGR CRRTDGKKWR CSRDAVPDQK YCERHINRGR HRSRKPVEGH  240
TGQAASGPTN TKVVPAMSSS MSSLVTSTGG ASNSTVTIAH QHHIKGLQPT GANNAAADSI  300
VNRFHVEQGL SAMPPTMNLK TNDSPFSIAK QHIQLDDSSQ SEFGLVSTDS LLNPTQKSAY  360
LGCKSYSSSI LEFNAQQTQD QYPLRHFMDV WPKDNSNRSS IPWPEDSLKS DWTQLSMSIP  420
MSTSDFSSSS SPNQEKATIS PLRLSRELDP SQMGVGVGTI VGETGMKQNA WIPISWGNSS  480
MGGPLGEVLN NTSIITSALN LKGDQRCDGS PQLGSSPTGV LQKSTFVSLS NSSSAGSPRA  540
ENKKTLEGAS LCDDILGSAA HASSTFVPSM *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	8e-99	GRF family protein