PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003987-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 243aa MW: 26639.2 Da PI: 8.0039

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003987-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	102.7	3.2e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q+ AUR62003987-RA 2 SCNGCRVLRKGCSESCILRPCLqwidtPESQGHATVFVAKFFGRAGLMSFISNVPDSQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ AUR62003987-RA 97 AVETVLR 103 *998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MSCNGCRVLR KGCSESCILR PCLQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPDSQR 60 PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHVCQAAVET VLRGGTLRPI SEFLVGAPPS 120 PVPTIVDADD NSEVVCPSNS NTNTWRKQIG GLNMMHQDVN NNIKKSRSSP PPPRFTNSKR 180 RKEEDDYHVK HLDLSLTPPT FLHAPPQQRP GTPSLNSEES ATTVSFESDN YYQPKLLNLF 240 VG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	9e-81	LBD family protein