PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003911-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 489aa MW: 54071.4 Da PI: 6.8054

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003911-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.5	6.6e-13	258	308	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++ + k +g AUR62003911-RA 258 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKTAIKCNG 308 89******.7**5553..2.26******99******9998766 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MWDLNGSPDE ITRAAVRGGG YPESEGGSSQ KTTSFDGDDK NSTSSAVVID ESGERSDGDD 60 PGGDRKKRTT NHHNSNSRRL FGFSFITNKN NSTNNDDEDE DNSSYSGDPP VTRQFFPVEI 120 DVSGEDVAGS SAGSFPKPAH WDGTKLYPTS DTMAAATLMG PTAVAKPTEL AQPMKKSRRG 180 PRSRSSQYRG LVIAELTKVE SIDSAYDRAA IKFRGVDADI NFTLEDYQDD LKKMGNLTKE 240 EFVHILRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEVEAARAYD 300 KTAIKCNGKD AVTNFDPSIY EEELKATGSS SSRKNTGLDF RDSNSAMLEQ QYQQYPSSMQ 360 LELNWQNQGS RPKDAYQDHA ETMQLLSQTR LQSSPTSLQP KEMSSMHNRY AGQMPVFVPP 420 HLNSSNYHHH QIQFPSSSNG GRIDLMLSSS SANISNINTS SGFSQQISRP PPNWMPPNNG 480 FHPLMRPS*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MWDLNGSPDE ITRAAVRGGG YPESEGGSSQ KTTSFDGDDK NSTSSAVVID ESGERSDGDD  60
PGGDRKKRTT NHHNSNSRRL FGFSFITNKN NSTNNDDEDE DNSSYSGDPP VTRQFFPVEI  120
DVSGEDVAGS SAGSFPKPAH WDGTKLYPTS DTMAAATLMG PTAVAKPTEL AQPMKKSRRG  180
PRSRSSQYRG LVIAELTKVE SIDSAYDRAA IKFRGVDADI NFTLEDYQDD LKKMGNLTKE  240
EFVHILRRQS TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEVEAARAYD  300
KTAIKCNGKD AVTNFDPSIY EEELKATGSS SSRKNTGLDF RDSNSAMLEQ QYQQYPSSMQ  360
LELNWQNQGS RPKDAYQDHA ETMQLLSQTR LQSSPTSLQP KEMSSMHNRY AGQMPVFVPP  420
HLNSSNYHHH QIQFPSSSNG GRIDLMLSSS SANISNINTS SGFSQQISRP PPNWMPPNNG  480
FHPLMRPS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-85	AP2 family protein