PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003863-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 598aa MW: 69785.7 Da PI: 9.6607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003863-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74	3.3e-23	39	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ YAk +GF +r+++++ +k +g+ t++ C++eg+re ++ +++r++++ tr+gC+a+++ k ++ ++ w+v++++ eHnH+l AUR62003863-RA 39 DFYKMYAKCMGFGIRRKHTRLRKLDGHPTSQIIWCNREGFREAKHLLrPDRKRKEKPITRCGCTAMINFKWDHlKDSWYVKSFVAEHNHALI 130 6**************************************9998765789999**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MPKAFRGLEV WEEIGKRLED FTFEDMQRLS FKDLQTCIDF YKMYAKCMGF GIRRKHTRLR 60 KLDGHPTSQI IWCNREGFRE AKHLLRPDRK RKEKPITRCG CTAMINFKWD HLKDSWYVKS 120 FVAEHNHALI PMNQVYFERT FRDVSEADQI YMKSLIDGVK PSITMRNIAR NAGGLRGVGF 180 LKKDLYNACE KFKKEEIKDG DTETVLAYLL GKTASDPNFF LRYTRHPKNG IEKMFWCDGI 240 SQGDYKAFGS KDHAIRCCSC NKRKNRYLHM GVKTVKKGWW RCYSSTVVTD GDKSMASAIE 300 EVFPKAHHRL CLWHLMRNIK GYTNRRFCNG FMKCVDGARI PAEFEEAWED LMKAYPKVRD 360 KKWAKDLYSV KSKWAEAFMV GQFYAGIPCQ HMFACMKHYG MVKLLAGVIL RRWTIRAKLH 420 LSDNYKQLQL KKANDQSSSN GRFAFLSVLS NQLCRMVSTS YDRSISLKDK LAKMILEVEK 480 EKTFPKEKDI IIEQKFVKKK GRGRPKSMFD ELEPAEEKTY SLDGHDLDEE GNDIDEAFPN 540 VTDHPTIIKR GGFFDLLIQL MPRTYQPSDV ARATDSYEVS IFERMPTIFD WDPNVSY*

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MPKAFRGLEV WEEIGKRLED FTFEDMQRLS FKDLQTCIDF YKMYAKCMGF GIRRKHTRLR  60
KLDGHPTSQI IWCNREGFRE AKHLLRPDRK RKEKPITRCG CTAMINFKWD HLKDSWYVKS  120
FVAEHNHALI PMNQVYFERT FRDVSEADQI YMKSLIDGVK PSITMRNIAR NAGGLRGVGF  180
LKKDLYNACE KFKKEEIKDG DTETVLAYLL GKTASDPNFF LRYTRHPKNG IEKMFWCDGI  240
SQGDYKAFGS KDHAIRCCSC NKRKNRYLHM GVKTVKKGWW RCYSSTVVTD GDKSMASAIE  300
EVFPKAHHRL CLWHLMRNIK GYTNRRFCNG FMKCVDGARI PAEFEEAWED LMKAYPKVRD  360
KKWAKDLYSV KSKWAEAFMV GQFYAGIPCQ HMFACMKHYG MVKLLAGVIL RRWTIRAKLH  420
LSDNYKQLQL KKANDQSSSN GRFAFLSVLS NQLCRMVSTS YDRSISLKDK LAKMILEVEK  480
EKTFPKEKDI IIEQKFVKKK GRGRPKSMFD ELEPAEEKTY SLDGHDLDEE GNDIDEAFPN  540
VTDHPTIIKR GGFFDLLIQL MPRTYQPSDV ARATDSYEVS IFERMPTIFD WDPNVSY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	94	RKRKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-39	FAR1 family protein