PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003844-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 258aa MW: 27234.7 Da PI: 5.985

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003844-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.4	1.2e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp++f nvhk+FGasnv kll++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l AUR62003844-RA 7 PCAACKFLRRKCTQECVFAPYFPPDQPQRFSNVHKVFGASNVAKLLNDLDATQREDAVNSLAYEAEARLRDPVYGCVGLISLLQHRLKQVQTDLY 101 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++k+e AUR62003844-RA 102 SAKKE 106 99887 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQRFSNVH KVFGASNVAK LLNDLDATQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISLLQ HRLKQVQTDL YSAKKELATY IGPTALMPMI 120 QPGYANPGSS SAVNLMQQQY HMGPMMGIPT GVAAAGPGPY TGGGGGYEGA LVIAGGSGGG 180 GFNQAGPSSG AVSPSLALGA ATFDPNPYAQ IQQQQPPPQQ QPPQDDQSLG QLLLLQQPVT 240 PQQPQQEHLE LAQLMHD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-76	LBD family protein