PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62003625-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 494aa    MW: 56911.5 Da    PI: 7.4048
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62003625-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.15.1e-2852136187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe++aL+++r+em+ ++r++ +k plW+e+s++m+e g++rs+k+Ckek+en+ k+++++k+ + +rt+++   +++fdqlea
  AUR62003625-RA  52 RWPQQETMALLRIRSEMDFAFRDSGSKSPLWDEISRRMAELGYHRSAKKCKEKFENIYKYHRRLKNCSYDRTNRKA--YRFFDQLEA 136
                     8*********************************************************************987776..*******85 PP
2trihelix957.1e-30324408186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k+ev +Li+++++me +++r   k+p Wee+s +m+  g+ r++k+Ckekwen+nk+y+++k+g+k+r   +s+tcpyf  l+
  AUR62003625-RA 324 RWPKEEVETLIKIKTNMELEYQRVGPKGPMWEEISTAMKNFGYDRNAKRCKEKWENINKYYRRVKDGNKQR-HADSKTCPYFPLLD 408
                     8*********************************************************************8.78889*****9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    
MVEISGDRRE NELGKSEKVE ERENDKNKEE EDENGAAELA VAVAERNSAA NRWPQQETMA  60
LLRIRSEMDF AFRDSGSKSP LWDEISRRMA ELGYHRSAKK CKEKFENIYK YHRRLKNCSY  120
DRTNRKAYRF FDQLEALGHQ QSSFQTSASE PADTSMNDTA YVVSPISSHP QCVPQMTMPT  180
SVNLDSFTIS TSTTSNSGSE SEGARTKKRK WADFFDILMK SVLEKQEALQ NKFLEALDKH  240
EHERQAREEA WKMQQMDRIK KEQELLMQER SISAAKDAAI AFLQKVLEQG KISGTSEQVL  300
EKPSQEMSIV GRKEKDNGES SSSRWPKEEV ETLIKIKTNM ELEYQRVGPK GPMWEEISTA  360
MKNFGYDRNA KRCKEKWENI NKYYRRVKDG NKQRHADSKT CPYFPLLDQL HNIKSKRLDN  420
NSENSGSNLR PEELLLHMMN HHSRQQQQEQ VALQQDQGGL TKQDSKVNHV EGTGNDAERA  480
YQVVTHNPLS VNV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-106Trihelix family protein