PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62002872-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

GATA

Protein Properties

Length: 498aa MW: 56084.9 Da PI: 8.3105

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62002872-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.9	2.4e-17	223	256	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C+tt+Tp+WR gp+g ktLCnaCG+ y++ + AUR62002872-RA 223 CMHCKTTDTPQWRTGPRGRKTLCNACGVQYKHGR 256 99*****************************987 PP
2	GATA	46.1	6.8e-15	417	450	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +++Tp+WR+gp g tLCnaCG+ yr + AUR62002872-RA 417 CLHCESKDTPQWREGPMGRHTLCNACGVQYRAGR 450 99*****************************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MATPENKGVA ISGNEKIGVD PIPNTHVSFG QLLDLGVINQ FGQLLGDYSR LDEDLWLCDH 60 EDDESMNALD NGYEGLKCQI IPSDETIVDV KQPLEYVDKA VCEGGMAYVK ETSTSLNNSS 120 QKNSQTSSPI SVFQTERPYT DVMSAMRAQS QCPTKNNIPG GLQFFGSTIY TRQQNSTCQS 180 ESEYSMESSL SDETEEYIPS KQMRTRKISD ILDSDSDPAL KKCMHCKTTD TPQWRTGPRG 240 RKTLCNACGV QYKHGRLFPD YRPLKSPGFD PSIHFHLPKK VQEMRMGSSS EQGPNPTPKS 300 KKIEERRVVY TIEKGQNLTP KPKEVEEIRI SHTSGRDQIT TPKTKSQRPS LESDSDEEWV 360 LGNNKRDKNR AHRAKKFEKL KEKVSNEIQS DSRERNQNSD SYLSLKRKLP KHAGKKCLHC 420 ESKDTPQWRE GPMGRHTLCN ACGVQYRAGR LFPEYRPLKS PTYDPSLHSH LPKQVLKMRL 480 SNAEKCATSG NHEASMS*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MATPENKGVA ISGNEKIGVD PIPNTHVSFG QLLDLGVINQ FGQLLGDYSR LDEDLWLCDH  60
EDDESMNALD NGYEGLKCQI IPSDETIVDV KQPLEYVDKA VCEGGMAYVK ETSTSLNNSS  120
QKNSQTSSPI SVFQTERPYT DVMSAMRAQS QCPTKNNIPG GLQFFGSTIY TRQQNSTCQS  180
ESEYSMESSL SDETEEYIPS KQMRTRKISD ILDSDSDPAL KKCMHCKTTD TPQWRTGPRG  240
RKTLCNACGV QYKHGRLFPD YRPLKSPGFD PSIHFHLPKK VQEMRMGSSS EQGPNPTPKS  300
KKIEERRVVY TIEKGQNLTP KPKEVEEIRI SHTSGRDQIT TPKTKSQRPS LESDSDEEWV  360
LGNNKRDKNR AHRAKKFEKL KEKVSNEIQS DSRERNQNSD SYLSLKRKLP KHAGKKCLHC  420
ESKDTPQWRE GPMGRHTLCN ACGVQYRAGR LFPEYRPLKS PTYDPSLHSH LPKQVLKMRL  480
SNAEKCATSG NHEASMS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	2e-26	GATA family protein