PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62002865-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 264aa    MW: 28561.6 Da    PI: 8.4821
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62002865-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.88.4e-294105197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C++dCv++p++      ++q++++ +++k++G++ +l+ll+a  e+ r+++++sl+yeA+ r+ dP+yG+vg++ ++q++ +ql
  AUR62002865-RA   4 SCNGCRILRKGCNDDCVIRPCLnwmmsNEAQSNATLFLAKFYGRAGLLNLLNAGAEHLRPAIFQSLLYEACGRVVDPIYGSVGLLYSGQWRHCQL 98 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l 
  AUR62002865-RA  99 AVDAVLK 105
                     9998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MRTSCNGCRI LRKGCNDDCV IRPCLNWMMS NEAQSNATLF LAKFYGRAGL LNLLNAGAEH  60
LRPAIFQSLL YEACGRVVDP IYGSVGLLYS GQWRHCQLAV DAVLKGLPIM QLSPPSLTIS  120
SDGPPLPPQQ VIHLPPLKLY DIRHMSSSKD STTVPATFVV PTGPRLKRRP RGSRAAPAFQ  180
ADQLSINGGN GNDAGGDVQS FERLSMFSGE STEGSVSGQM GADSEALVGS NSYNLLDEND  240
RSSLITLRRD KISTAQVSFL FWK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171RLKRRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-60LBD family protein