PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62001957-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 336aa    MW: 38242.6 Da    PI: 8.7206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62001957-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.51.7e-181048240
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    +i  +  r++t+ kR++g+lKKA+ELS+LC++ v++ii+
  AUR62001957-RA 10 FIVKEKARNTTYVKRKKGLLKKAHELSILCNVPVCIIIY 48
                    5667789*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MGRAKIAMEF IVKEKARNTT YVKRKKGLLK KAHELSILCN VPVCIIIYPY KEGKQSSEAE  60
VYAFKGDSIR ESNAMDLSRA TDPMVAREMI DRYFRIPNEE KYKRALNLYD MFDEWTKKAD  120
QELSKLRHKN ALVKYPSWDS SFDGLTLEQF MELLVHLDQK IEFVRQKILL IKGHNHTHEG  180
AALVPYLEPT PISSHQIGFP YVEGFNQLTS FNYPINNNNY NHQQFCHQLM PINYPNLDIQ  240
GGSSSSHQMG GTRMDDQGGS SSKGSNLMYN MNSIPGVVPV YYDQGRGFVD NVGATSSYGA  300
GLTMSSLPLQ SLPMLPSASL QRQRQYQMYY KQVCE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11326KEKARNTTYVKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-13M-type_MADS family protein