PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001809-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

WOX

Protein Properties

Length: 631aa MW: 71230.7 Da PI: 5.7141

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001809-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.2	7.9e-10	37	75	3	39
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHCTS CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkklgL 39 +R+++tkeq+e Le+++ + r+psae++++++++l++ AUR62001809-RA 37 SRWNPTKEQIEMLERMYSNegVRTPSAEQIQQITARLRV 75 6***************7779************986 PP
2	Wus_type_Homeobox	46.1	1.2e-15	37	74	4	40
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLe 40 +RW+Pt+eQi++Le++y+ +G+rtP++e+iq+ita+L+ AUR62001809-RA 37 SRWNPTKEQIEMLERMYSnEGVRTPSAEQIQQITARLR 74 7**************879**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MEENSRERNN HDVDFDDDVE DQEVEERSPT SSAIGGSRWN PTKEQIEMLE RMYSNEGVRT 60 PSAEQIQQIT ARLRVPIFPA SHPTYHHHFL PNPNVMCSPY YHVPQANLGF YNPPQHHYSA 120 PATPDNDHQG MKKIVGGVDD MGEDLLASLS MENHHPSTLL SMDSSSKSHE EKEREISRHI 180 ILSRPGPPDI NLPLSAERSP PPPQTWNQEA CDMLEVGLGT QCAKRLDSVW GAWFFFSFYF 240 KPSLNEKSKT KIVRDGNGVS GFEKSDLQLE SFLVQHDMEN MYMWVFKERP ENALGKMQLR 300 SYMNGHSRQG ERPFPFSVEK GFVRSHKMQR KHYRGLSNPQ CLHGIEIVRQ PNLSAVDEEE 360 QRRWMELTGR DLSFSLPEEA SEFASWRNLP STEFELERPL PALKSTANGH SKKLLNGSGL 420 NLSTQPSNHV NDVFDLSAAA TKKRKDVPAH GNDEDSCLPA NTHSSDGTQD AVEVHPIEPM 480 WAPEFTGVMR NVYGPVTCAK SIYEDDDGYM IVISLPFTDL QKVKVSWWNT ISHGVVKVTS 540 VSTACMPYIQ RNDRTFKLTD PSPEHCPPGD FKREIPLPSR IPDDAKLEAY FDNSGTVLEI 600 SVPKPRVGPE EHEVPICLRS HLGGNDLLLS *

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MEENSRERNN HDVDFDDDVE DQEVEERSPT SSAIGGSRWN PTKEQIEMLE RMYSNEGVRT  60
PSAEQIQQIT ARLRVPIFPA SHPTYHHHFL PNPNVMCSPY YHVPQANLGF YNPPQHHYSA  120
PATPDNDHQG MKKIVGGVDD MGEDLLASLS MENHHPSTLL SMDSSSKSHE EKEREISRHI  180
ILSRPGPPDI NLPLSAERSP PPPQTWNQEA CDMLEVGLGT QCAKRLDSVW GAWFFFSFYF  240
KPSLNEKSKT KIVRDGNGVS GFEKSDLQLE SFLVQHDMEN MYMWVFKERP ENALGKMQLR  300
SYMNGHSRQG ERPFPFSVEK GFVRSHKMQR KHYRGLSNPQ CLHGIEIVRQ PNLSAVDEEE  360
QRRWMELTGR DLSFSLPEEA SEFASWRNLP STEFELERPL PALKSTANGH SKKLLNGSGL  420
NLSTQPSNHV NDVFDLSAAA TKKRKDVPAH GNDEDSCLPA NTHSSDGTQD AVEVHPIEPM  480
WAPEFTGVMR NVYGPVTCAK SIYEDDDGYM IVISLPFTDL QKVKVSWWNT ISHGVVKVTS  540
VSTACMPYIQ RNDRTFKLTD PSPEHCPPGD FKREIPLPSR IPDDAKLEAY FDNSGTVLEI  600
SVPKPRVGPE EHEVPICLRS HLGGNDLLLS *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	8e-12	WOX family protein