PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001538-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

E2F/DP

Protein Properties

Length: 457aa MW: 50197.2 Da PI: 4.4548

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001538-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	77.9	9.8e-25	130	197	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l+e++e+gi++l++ a++L e + ++RRiYDi+NVLe+++liek kn i+wkg AUR62001538-RA 130 RSGRSLVLLTKKFINLIEQAEDGILDLKKTAQTL--EVQNRQKRRIYDITNVLEGIGLIEK-LKNGIQWKG 197 6789****************************..544459***************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MATPRASKAV PEKREVVLLA RMKPPFAESP GDYYSFSDRL LPPPDAIVVN TPPKKRKNKP 60 ADHNTESTSR TTTQGLREVL SSPFQTPVSG KCGNGQRASR NTPCDIDHPQ TPMSMIGSPG 120 ENLTPGGPCR SGRSLVLLTK KFINLIEQAE DGILDLKKTA QTLEVQNRQK RRIYDITNVL 180 EGIGLIEKLK NGIQWKGPSV SRPGEVSNGV ATLQADIENL SMEERKLDER ISEIQERLRD 240 ITEDTNNQKW LFVSEEDMKA LPCFQDETLI AIKAPHGTTL EVPEPDEGVD HPQRKYRIVL 300 RSTMGPIDVY LVSQFEEKVE ETNGAETLQS LPSTSGCNDL SNAMAENENS DNQIELHGQE 360 ANRMSSDGCA PQDLSGIMKI VPEVYNDADY WLLSDADVSI SDMWGAESGV DWDELGIVPE 420 DYAVEDISTQ QQPQSLLSLL TSATGVPPAI ADSTGR*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MATPRASKAV PEKREVVLLA RMKPPFAESP GDYYSFSDRL LPPPDAIVVN TPPKKRKNKP  60
ADHNTESTSR TTTQGLREVL SSPFQTPVSG KCGNGQRASR NTPCDIDHPQ TPMSMIGSPG  120
ENLTPGGPCR SGRSLVLLTK KFINLIEQAE DGILDLKKTA QTLEVQNRQK RRIYDITNVL  180
EGIGLIEKLK NGIQWKGPSV SRPGEVSNGV ATLQADIENL SMEERKLDER ISEIQERLRD  240
ITEDTNNQKW LFVSEEDMKA LPCFQDETLI AIKAPHGTTL EVPEPDEGVD HPQRKYRIVL  300
RSTMGPIDVY LVSQFEEKVE ETNGAETLQS LPSTSGCNDL SNAMAENENS DNQIELHGQE  360
ANRMSSDGCA PQDLSGIMKI VPEVYNDADY WLLSDADVSI SDMWGAESGV DWDELGIVPE  420
DYAVEDISTQ QQPQSLLSLL TSATGVPPAI ADSTGR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-117	E2F/DP family protein