PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001266-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 673aa MW: 74319.6 Da PI: 4.6677

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001266-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.7	1.3e-10	320	343	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f+ rtGtCk+G +CkF+H+p AUR62001266-RA 320 EDCTFYVRTGTCKFGMNCKFNHPP 343 89********************96 PP
2	zf-CCCH	26.3	1.3e-08	380	402	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f r G Ck+G CkF+H++ AUR62001266-RA 380 DCKYFDRPGGCKFGKACKFNHSR 402 6********************95 PP
3	zf-CCCH	37.9	2.9e-12	421	444	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++r+G Ck+G++C+F+H+ AUR62001266-RA 421 EKECPFYMRNGSCKFGANCRFNHP 444 689********************9 PP
4	zf-CCCH	31.7	2.6e-10	567	593	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+r+G Cky + CkF+H++ AUR62001266-RA 567 PGQPECSYFLRNGDCKYRSACKFHHPK 593 5789*********************96 PP
5	zf-CCCH	34.3	3.9e-11	614	638	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++r+G+CkyG+ Ck+ H+ AUR62001266-RA 614 GENVCSYYSRYGICKYGPACKYDHP 638 6678********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MELGLXXXXX XXXXTTCPLG LSLTNQQNST ISSAESPSSS FDRHQSSDSI NDRLVSLSID 60 AVAAVNGGED GDPKAERENN EEENGEIEIV RSNDLKGRNS SEDVIAVIEA TDNGDRTEEI 120 GNNEEECREE KREIENVNMS ELSGRSSSNS FAADNNGGED VDRPEALENR KLGVEEKQGI 180 ENVSKIEGSE EVVTCRISSD RIQTEIEASN NGGEDGDHTV VIENHEVESR KEKGEIENVS 240 KIEGSEKELA CRISSDGFQS EFEEGDNGDE DGDGTVVMEN HGVESGEEKG EIENVSRNEG 300 SEKVLSRRNS NKFPVRPEAE DCTFYVRTGT CKFGMNCKFN HPPNNRRFQG VKVRAKEERV 360 ASTIHKVKEK DESVDNEQID CKYFDRPGGC KFGKACKFNH SRKTNPTSKL NFMGLPIRLG 420 EKECPFYMRN GSCKFGANCR FNHPDPTSAR GPDASPKYSN GGSIFAPNAS HLTLAPWSPP 480 TTLNENPPYI PLMFSPTQGV PSQSEWNAYQ LSQSCPFCFP PSMHVNIDKA PVYPPERSIH 540 IPPTFAMNSQ LLKRPEEMLG EEFPERPGQP ECSYFLRNGD CKYRSACKFH HPKSVMAQSP 600 SCLLSDLGLP LRPGENVCSY YSRYGICKYG PACKYDHPIN YAHSSELTVS AVDQTPVLGD 660 SVIKNQAMAA ES*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MELGLXXXXX XXXXTTCPLG LSLTNQQNST ISSAESPSSS FDRHQSSDSI NDRLVSLSID  60
AVAAVNGGED GDPKAERENN EEENGEIEIV RSNDLKGRNS SEDVIAVIEA TDNGDRTEEI  120
GNNEEECREE KREIENVNMS ELSGRSSSNS FAADNNGGED VDRPEALENR KLGVEEKQGI  180
ENVSKIEGSE EVVTCRISSD RIQTEIEASN NGGEDGDHTV VIENHEVESR KEKGEIENVS  240
KIEGSEKELA CRISSDGFQS EFEEGDNGDE DGDGTVVMEN HGVESGEEKG EIENVSRNEG  300
SEKVLSRRNS NKFPVRPEAE DCTFYVRTGT CKFGMNCKFN HPPNNRRFQG VKVRAKEERV  360
ASTIHKVKEK DESVDNEQID CKYFDRPGGC KFGKACKFNH SRKTNPTSKL NFMGLPIRLG  420
EKECPFYMRN GSCKFGANCR FNHPDPTSAR GPDASPKYSN GGSIFAPNAS HLTLAPWSPP  480
TTLNENPPYI PLMFSPTQGV PSQSEWNAYQ LSQSCPFCFP PSMHVNIDKA PVYPPERSIH  540
IPPTFAMNSQ LLKRPEEMLG EEFPERPGQP ECSYFLRNGD CKYRSACKFH HPKSVMAQSP  600
SCLLSDLGLP LRPGENVCSY YSRYGICKYG PACKYDHPIN YAHSSELTVS AVDQTPVLGD  660
SVIKNQAMAA ES*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-103	C3H family protein