PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001265-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 1417aa MW: 157908 Da PI: 8.3314

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001265-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	1325	1347	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H AUR62001265-RA 1325 CPvkGCGKKFFSHKYLVQHRRVH 1347 9999*****************99 PP
2	zf-C2H2	12.8	0.00036	1383	1409	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H AUR62001265-RA 1383 YVCNepGCGQTFRFVSDFSRHKRKtgH 1409 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1417 aa Download sequence
MGSSSFVTAE HSSPEVFPWL KTLPVAPEYH PTIQEFQDPI AYIFKIEKEA SKFGICKIVP 60 PVPPQSKKSV ISNLNRSLQS LPNNCNSNTH QNPNNSQPTF TTRQQQVGFC PRKQRPIHKS 120 VWQSGEYYTL QQFEAKAKNF EKTYLKNRAK KAVSPFEVET LYWKANGDRP FSVEYANDMP 180 GSGFIPMKDK KTGEVVSVGA SNVGETAWNM RGVARSNGSL LRFMKEEIPG VTSPMVYVAM 240 MFSWFAWHVE DHDLHSLNYL HFGAGKTWYG VPKDAASAFE EVIRVHGFGE EINPLVTFAT 300 LGEKTTVMSP EVLINAGVPC CRLVQNAGEF VVTFPRAYHS GFSHGFNCGE ASNIATPEWL 360 MFAKDAAIRR ASINYPPMVS HFQLLYDLAL AICSRASEGS NAGPRSSRLK DKKKGEGEML 420 VKQMFVQDVM QNNDLLYTLG QGSEVVLLPH NSSEIFVWSN LRVGSKYKVK PGLPFSLYSS 480 EEAIKASDDI MLARDVKQQK SFYSVKSKFG DSMSAVSREI QHSVTEKEGG ASGDGLSDRG 540 LFSCVKCGIW TFACVAIVQP TESAAQYLMS ADCSSFNDWI VGSGVSSHRI DPNDGEANTS 600 DPDSFSGSME KNGPEGSYGN PVHSTDHQGQ STINTSTMKS TTSENVEVGS HTEIKNESSA 660 LGLLAMTYGH SSDSDEDDVQ PNCPVVSEDN LSGDGSWGAR FHQDDSASPN IEQGYDSGLE 720 RGPSQISSRS DCEDEDSPQR SDLYEHCGHR RINGDDDEYD SHNCSAKFTE EDTLTSDRNY 780 SPIADEHNTA KYSCAIDPVG KPNLSYPRRC DEDSSRMHVF CLEHAVEVEK QLRPIGGVHI 840 LLLCHPDYPN VEVEAKKVAE ELEMDYGWKD IAFSMATKED EERIHMALQS EEATPKNGDW 900 AVKLGINLFY SAILSRSPLY NKQMPYNSVI YNAFGCSTPS KFSLEAKVCG KGFGRQKKLV 960 MAGKWCGKVW MSNQVHPLLL HRDPDEDACL KSDGKVGRKS ETSYKAQTTH ANRKAGKKRR 1020 SMPESRIAKK MKFEVTDFAD TDPEDSVDDK PELETRRSVR KSKTQCRPIK RVKHQEEIPD 1080 TNSEDSQEDF KSPRGTVRSV RTLKRGAKQI LKAKGHQSAA AIHNYSDDDS LDDRSHQHGL 1140 RSCNRKLKAE GKSARKVISQ PKDVDSESEG SPSNESELEE QRNFRSPGSS QRQVPVHKQF 1200 EPVTDDDEMD GGPSTRLRKR ISRPTQDRRE TKPAVKRQVQ KSKGKKAAPV VKNAIPARKG 1260 PKMRLPVSRG PAMKGPARKN PSLSTGDAXX XXXXXXTAEF ACDVEGCSMS LGSKQELALH 1320 KRNICPVKGC GKKFFSHKYL VQHRRVHMDD RPLKCPWKGC RMTFKWAWAR TEHIRVHTGA 1380 RPYVCNEPGC GQTFRFVSDF SRHKRKTGHA AKKARK*

Sequence ? help Back to Top

Protein Sequence Length: 1417 aa Download sequence

MGSSSFVTAE HSSPEVFPWL KTLPVAPEYH PTIQEFQDPI AYIFKIEKEA SKFGICKIVP  60
PVPPQSKKSV ISNLNRSLQS LPNNCNSNTH QNPNNSQPTF TTRQQQVGFC PRKQRPIHKS  120
VWQSGEYYTL QQFEAKAKNF EKTYLKNRAK KAVSPFEVET LYWKANGDRP FSVEYANDMP  180
GSGFIPMKDK KTGEVVSVGA SNVGETAWNM RGVARSNGSL LRFMKEEIPG VTSPMVYVAM  240
MFSWFAWHVE DHDLHSLNYL HFGAGKTWYG VPKDAASAFE EVIRVHGFGE EINPLVTFAT  300
LGEKTTVMSP EVLINAGVPC CRLVQNAGEF VVTFPRAYHS GFSHGFNCGE ASNIATPEWL  360
MFAKDAAIRR ASINYPPMVS HFQLLYDLAL AICSRASEGS NAGPRSSRLK DKKKGEGEML  420
VKQMFVQDVM QNNDLLYTLG QGSEVVLLPH NSSEIFVWSN LRVGSKYKVK PGLPFSLYSS  480
EEAIKASDDI MLARDVKQQK SFYSVKSKFG DSMSAVSREI QHSVTEKEGG ASGDGLSDRG  540
LFSCVKCGIW TFACVAIVQP TESAAQYLMS ADCSSFNDWI VGSGVSSHRI DPNDGEANTS  600
DPDSFSGSME KNGPEGSYGN PVHSTDHQGQ STINTSTMKS TTSENVEVGS HTEIKNESSA  660
LGLLAMTYGH SSDSDEDDVQ PNCPVVSEDN LSGDGSWGAR FHQDDSASPN IEQGYDSGLE  720
RGPSQISSRS DCEDEDSPQR SDLYEHCGHR RINGDDDEYD SHNCSAKFTE EDTLTSDRNY  780
SPIADEHNTA KYSCAIDPVG KPNLSYPRRC DEDSSRMHVF CLEHAVEVEK QLRPIGGVHI  840
LLLCHPDYPN VEVEAKKVAE ELEMDYGWKD IAFSMATKED EERIHMALQS EEATPKNGDW  900
AVKLGINLFY SAILSRSPLY NKQMPYNSVI YNAFGCSTPS KFSLEAKVCG KGFGRQKKLV  960
MAGKWCGKVW MSNQVHPLLL HRDPDEDACL KSDGKVGRKS ETSYKAQTTH ANRKAGKKRR  1020
SMPESRIAKK MKFEVTDFAD TDPEDSVDDK PELETRRSVR KSKTQCRPIK RVKHQEEIPD  1080
TNSEDSQEDF KSPRGTVRSV RTLKRGAKQI LKAKGHQSAA AIHNYSDDDS LDDRSHQHGL  1140
RSCNRKLKAE GKSARKVISQ PKDVDSESEG SPSNESELEE QRNFRSPGSS QRQVPVHKQF  1200
EPVTDDDEMD GGPSTRLRKR ISRPTQDRRE TKPAVKRQVQ KSKGKKAAPV VKNAIPARKG  1260
PKMRLPVSRG PAMKGPARKN PSLSTGDAXX XXXXXXTAEF ACDVEGCSMS LGSKQELALH  1320
KRNICPVKGC GKKFFSHKYL VQHRRVHMDD RPLKCPWKGC RMTFKWAWAR TEHIRVHTGA  1380
RPYVCNEPGC GQTFRFVSDF SRHKRKTGHA AKKARK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein