PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62001093-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 826aa MW: 94443.6 Da PI: 8.2415

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62001093-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.1	1.3e-19	545	633	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+l Li+a++e++ +l+rg+lk+ +Weev++ + ++ g+ ++s +qC++k+e+l+kry+++k+ ++ + + + + + yf+ ++ AUR62001093-RA 545 WSHEETLNLIKAYQEKWYSLKRGQLKASQWEEVAITVaARCGLddpSKSGTQCRHKIEKLRKRYRAEKQKMGPNFNYHNHPWIYFSLMD 633 *********************************9964556655589*********************99999999**9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
MPEDIHLIRE EERGRKSEIE VSEDEPIRRT RIKSLRKKAA SASTKLAHGL KKRGKRVADC 60 KFASIAIDDF RDEKEEEAVD AFRLVLVEKN MLPHHLDDYH TMLRFLKARK FDLDKTIHMW 120 EEMIKWRKEN GVDTIVQDFY YEEFDDVQRH YPHGYHGVDK DGRPVYIERL GKIETAKLMN 180 VTTIERFLKY HVQGFEKAFA EKFPACSIAA KRHIDSTTTI LDVHGVNWMS FGKVALDLIK 240 NMQKIDGDNY PETLHQMFII NAGAGFKMIW TTVKSFLDPR TTSKIHVLGS KFHSKLMEFV 300 DLSQLPDFVG GTCSCPGGCL KYQKGPWNDP EIMKLVHSQE IMYMKRTTSS SDCEDLKSKI 360 FANKATRNDM VFAGVVPDLD GQIPNIAASA DDNVILGESS CIGNPVEIVR TKAKAEEANL 420 TTVVQKIEDS LLNPCWKRLQ HLEQMVTDLV NKPTRIPPDK EATLVESLKR IKAIEYDLQK 480 TKKALFATAS KQVELAESLE NLRESSMHVF LIYCSDCSSG LQCSAVISQN SLSYSPLKKP 540 QPIPWSHEET LNLIKAYQEK WYSLKRGQLK ASQWEEVAIT VAARCGLDDP SKSGTQCRHK 600 IEKLRKRYRA EKQKMGPNFN YHNHPWIYFS LMDQLERGPL PISAIAPADN NNNSSRYYDV 660 NGNNNSNHYV RHGSDDDDEE GGGVRFGSME KLRRDLKRGF GRRGGDFGGL NKRKSYWEGD 720 DDEVGFEDGD EEVGGVQERE NGRNFMAQLG AQFRGFAENF VRIEKKKLDF MRDNQRLRIE 780 MESKKREMIL VYQHKTIQLI NKAFTDASAA ASSSQKKMKM MSPDL*

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

MPEDIHLIRE EERGRKSEIE VSEDEPIRRT RIKSLRKKAA SASTKLAHGL KKRGKRVADC  60
KFASIAIDDF RDEKEEEAVD AFRLVLVEKN MLPHHLDDYH TMLRFLKARK FDLDKTIHMW  120
EEMIKWRKEN GVDTIVQDFY YEEFDDVQRH YPHGYHGVDK DGRPVYIERL GKIETAKLMN  180
VTTIERFLKY HVQGFEKAFA EKFPACSIAA KRHIDSTTTI LDVHGVNWMS FGKVALDLIK  240
NMQKIDGDNY PETLHQMFII NAGAGFKMIW TTVKSFLDPR TTSKIHVLGS KFHSKLMEFV  300
DLSQLPDFVG GTCSCPGGCL KYQKGPWNDP EIMKLVHSQE IMYMKRTTSS SDCEDLKSKI  360
FANKATRNDM VFAGVVPDLD GQIPNIAASA DDNVILGESS CIGNPVEIVR TKAKAEEANL  420
TTVVQKIEDS LLNPCWKRLQ HLEQMVTDLV NKPTRIPPDK EATLVESLKR IKAIEYDLQK  480
TKKALFATAS KQVELAESLE NLRESSMHVF LIYCSDCSSG LQCSAVISQN SLSYSPLKKP  540
QPIPWSHEET LNLIKAYQEK WYSLKRGQLK ASQWEEVAIT VAARCGLDDP SKSGTQCRHK  600
IEKLRKRYRA EKQKMGPNFN YHNHPWIYFS LMDQLERGPL PISAIAPADN NNNSSRYYDV  660
NGNNNSNHYV RHGSDDDDEE GGGVRFGSME KLRRDLKRGF GRRGGDFGGL NKRKSYWEGD  720
DDEVGFEDGD EEVGGVQERE NGRNFMAQLG AQFRGFAENF VRIEKKKLDF MRDNQRLRIE  780
MESKKREMIL VYQHKTIQLI NKAFTDASAA ASSSQKKMKM MSPDL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	469	483	KRIKAIEYDLQKTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	3e-28	Trihelix family protein