PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000433-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 410aa MW: 46886 Da PI: 5.0596

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000433-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117	1.1e-36	10	108	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkCa+dC+lapyfpa++pk f+++h+l+G+ n++k+lk+l+ ++ +++am+s+++e+e+r++ Pv G++ i++l++ql+ql++el AUR62000433-RA 10 ACAACKYQRRKCAPDCPLAPYFPADKPKMFQCAHRLYGVCNITKILKKLDSKDrKDEAMKSIIFESEMRQKYPVFGCCYAIWQLNEQLSQLQEEL 104 7**********************************************77774799***********************************9 PP DUF260 95 allk 98 +++ AUR62000433-RA 105 YYVQ 108 9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MTIKGGTSQA CAACKYQRRK CAPDCPLAPY FPADKPKMFQ CAHRLYGVCN ITKILKKLDS 60 KDRKDEAMKS IIFESEMRQK YPVFGCCYAI WQLNEQLSQL QEELYYVQSW LAILKNKEHS 120 HGNITVDPTQ PSTIQPSQLQ LDSAPSTSYN PHHQSNVDMY FAPNKFFVGD QDFAFAEPNV 180 GVKPSLLLQQ QYGANNNYCV NSLSNEMKQF IISQRLPLQQ ELDEVSQDHY DDLPFDTIAD 240 DQQSYIESKG VCESRVSPET QNRIDSICRS NEDYGFCNKV FHADIPKPDM DYVGLTKITI 300 MEARRNASNT LDYIRAQIPG AKDQELDYYK VCEDAYSTLK QSFDLAFDDF NKGNYEQMIA 360 YEWDTPRTQA KCVTIFTVPS PALEILNERN REMRILITMA VITATYIVT*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MTIKGGTSQA CAACKYQRRK CAPDCPLAPY FPADKPKMFQ CAHRLYGVCN ITKILKKLDS  60
KDRKDEAMKS IIFESEMRQK YPVFGCCYAI WQLNEQLSQL QEELYYVQSW LAILKNKEHS  120
HGNITVDPTQ PSTIQPSQLQ LDSAPSTSYN PHHQSNVDMY FAPNKFFVGD QDFAFAEPNV  180
GVKPSLLLQQ QYGANNNYCV NSLSNEMKQF IISQRLPLQQ ELDEVSQDHY DDLPFDTIAD  240
DQQSYIESKG VCESRVSPET QNRIDSICRS NEDYGFCNKV FHADIPKPDM DYVGLTKITI  300
MEARRNASNT LDYIRAQIPG AKDQELDYYK VCEDAYSTLK QSFDLAFDDF NKGNYEQMIA  360
YEWDTPRTQA KCVTIFTVPS PALEILNERN REMRILITMA VITATYIVT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-37	LBD family protein