PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000244-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 557aa MW: 60793.2 Da PI: 5.0168

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000244-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	40	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l AUR62000244-RA 40 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 87 79******************************************9986 PP
2	Myb_DNA-binding	52.2	1.4e-16	93	136	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ AUR62000244-RA 93 KGSFTPEEENRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 136 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MIEMTSDSDK RKAARCRKNS PDAEEVSSGG NSSGGSCLKK GPWTSAEDAI LVEYVTKHGE 60 GNWNAVQKHS GLSRCGKSCR LRWANHLRPD LKKGSFTPEE ENRIIELHAK MGNKWARMAA 120 ELPGRTDNEI KNYWNTRIKR LLRAGLPIYP PSVSRQARND SQQSEEMMTC QSGDIHHSES 180 SDTNSFQIPD VEFKNLGLDQ GYINCSPALL DIAPTNLLPK AVSSSNSYGF MFSSLNPHKR 240 LREVDSQFHV NVPSTSNTFP KFERHEDDPF GRLVPVQPLW SPPIYDPDLN INGTSAIDVL 300 GSHAPINGNS SSSEPVSEAM KLELPSLQYS ASQVGSWATP SSPLPSLESV DTLIQSPLSE 360 HTQSNCPSPR SSGLLEAIVY ESQSLKCSNY NSHQQGLDTS VMAGDVVESS SRNVCEPKWD 420 ACGDPISPLS HSAASVFVEF TPVSGGSSSD EPQSAETIPG KFDWISAESD GKKDVSCPLE 480 YLRPDALLDS YWFSHRIGRS KDESITGDFG ALLGDDFSYE HKQGSALPCD ESNQSSGLGT 540 STWDTICGVY PFSKND*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MIEMTSDSDK RKAARCRKNS PDAEEVSSGG NSSGGSCLKK GPWTSAEDAI LVEYVTKHGE  60
GNWNAVQKHS GLSRCGKSCR LRWANHLRPD LKKGSFTPEE ENRIIELHAK MGNKWARMAA  120
ELPGRTDNEI KNYWNTRIKR LLRAGLPIYP PSVSRQARND SQQSEEMMTC QSGDIHHSES  180
SDTNSFQIPD VEFKNLGLDQ GYINCSPALL DIAPTNLLPK AVSSSNSYGF MFSSLNPHKR  240
LREVDSQFHV NVPSTSNTFP KFERHEDDPF GRLVPVQPLW SPPIYDPDLN INGTSAIDVL  300
GSHAPINGNS SSSEPVSEAM KLELPSLQYS ASQVGSWATP SSPLPSLESV DTLIQSPLSE  360
HTQSNCPSPR SSGLLEAIVY ESQSLKCSNY NSHQQGLDTS VMAGDVVESS SRNVCEPKWD  420
ACGDPISPLS HSAASVFVEF TPVSGGSSSD EPQSAETIPG KFDWISAESD GKKDVSCPLE  480
YLRPDALLDS YWFSHRIGRS KDESITGDFG ALLGDDFSYE HKQGSALPCD ESNQSSGLGT  540
STWDTICGVY PFSKND*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	2e-82	MYB family protein