PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000185-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SRS

Protein Properties

Length: 371aa MW: 37758.5 Da PI: 8.1443

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000185-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212.1	1.4e-65	139	311	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.............aeaaskrkrelkskkqs 84 sg+ +CqdCGnqakkdC h+RCRtCC+srgfdC+thvkstWvpaa+rrerq + ++ + + +++ +k++r +s++++ AUR62000185-RA 139 SGALTCQDCGNQAKKDCIHRRCRTCCRSRGFDCSTHVKSTWVPAARRRERQMMGVPGAAGTHGTGggsvgggggassgSTSGAKKPRLISSQNTA 233 78899*******************************************88766554444433367799998878888999988777777 PP DUF702 85 alsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++s+t++s++ +++++etss lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e AUR62000185-RA 234 TTSHTSTSNT-PPRSFETSSshqdasfkdsLPGQVKAPAVFKCVRVTAVDDGEDEFAYQAVVKIGGHVFKGFLYDQGVE 311 7777776666.677888877799****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGMFVVAPAT SFQQHESSLM LDHHHHHSHH HGGEMNGGNN AATALGVGVG VGVIPLFNAG 60 PCLNVAGTGE TGGSNNNALD GNDSFMSRNH RAGAIQLWQA QQQMGGGSPN YPKKSINFDP 120 TGPNLLHSSS SAMGCGGGSG ALTCQDCGNQ AKKDCIHRRC RTCCRSRGFD CSTHVKSTWV 180 PAARRRERQM MGVPGAAGTH GTGGGSVGGG GGASSGSTSG AKKPRLISSQ NTATTSHTST 240 SNTPPRSFET SSSHQDASFK DSLPGQVKAP AVFKCVRVTA VDDGEDEFAY QAVVKIGGHV 300 FKGFLYDQGV EPRDGFPNLS ELHLGGAASS SAGRNGGASS SSPLLDPSDV YGASGGAGLL 360 GGSSYGNTMN *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGMFVVAPAT SFQQHESSLM LDHHHHHSHH HGGEMNGGNN AATALGVGVG VGVIPLFNAG  60
PCLNVAGTGE TGGSNNNALD GNDSFMSRNH RAGAIQLWQA QQQMGGGSPN YPKKSINFDP  120
TGPNLLHSSS SAMGCGGGSG ALTCQDCGNQ AKKDCIHRRC RTCCRSRGFD CSTHVKSTWV  180
PAARRRERQM MGVPGAAGTH GTGGGSVGGG GGASSGSTSG AKKPRLISSQ NTATTSHTST  240
SNTPPRSFET SSSHQDASFK DSLPGQVKAP AVFKCVRVTA VDDGEDEFAY QAVVKIGGHV  300
FKGFLYDQGV EPRDGFPNLS ELHLGGAASS SAGRNGGASS SSPLLDPSDV YGASGGAGLL  360
GGSSYGNTMN *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	5e-65	SRS family protein