PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01101.1.g00050.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 655aa    MW: 70509.1 Da    PI: 6.0476
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01101.1.g00050.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.31.6e-31467551186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpy
  Zpz_sc01101.1.g00050.1.am.mk 467 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSARMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PSQAKTCPY 546
                                   8*********************************************************************8.77778**** PP

                      trihelix  82 fdqle 86 
                                   fd+l+
  Zpz_sc01101.1.g00050.1.am.mk 547 FDELD 551
                                   ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.236460524IPR017877Myb-like domain
SMARTSM007170.0065464526IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-4465523IPR009057Homeodomain-like
PfamPF138373.6E-23466553No hitNo description
CDDcd122036.47E-30466531No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDSAF AMSAPPPPQP AQPPPPTAGG QELGGPFRYQ PLHHHALPPQ  60
HHHHHAPPMP PHFAHFAGGG IPFTQQLLHQ AATAAGHHPH LQLFQEQQQH HHHHHKPPQP  120
PPQQQPTRWA PQHPHHHHHH HLGFDVEAAV PESSGAAGGS TASGGGATPG VPPFLAAAMN  180
FKLAVDAGGG SAATGGTDDA LNDGGGGGGG MMLHVGGAGA DDEAATESRL RRWPGDEETS  240
IKEPTWREQR TSNNSGMIEK EDTPDADADT GSGSGLTGDD NVILEPAMPD LPGPEAGDAP  300
QLNTSDTSAG EDVAAVVQRQ PQPSSDTTRR KRKRRRQEHL SASASFFERL VQRLMEHQES  360
LHRQFLEAME RRERERAARN EEWRRQEAEK FAREVAARAQ DRASAAAREA AIIAYLEKLS  420
GESINLPPPA APSAEDISQD AVGKELVAYE GGEAAGGSGA LHMSTSRWPK HEVEALIRVR  480
TGLEGRFQEP GLKGPLWEEV SARMAAAGYG RSAKRCKEKW ENINKYFRKA KESGKKRPSQ  540
AKTCPYFDEL DRLYSRSSSS NANAGSAGGG AGDEHDAKAS SELLDAVVKY PEGPPGFVYD  600
DKDPSSVDAK APNSEVLRKE GEEGGIGSGR ATDDPEPEDH QIQAEERHGE DDQHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328333RRKRKR
2329334RKRKRR
3329335RKRKRRR
4330335KRKRRR
5331335RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01101.1.g00050.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819158.10.0trihelix transcription factor GT-2-like
TrEMBLA0A3L6RV100.0A0A3L6RV10_PANMI; Trihelix transcription factor GTL1-like
STRINGPavir.Aa03569.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-38Trihelix family protein