PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08975.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 535aa    MW: 60888.2 Da    PI: 9.5532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08975.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.6e-14550248
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Zmw_sc08975.1.g00010.1.am.mk  5 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 50
                                  78*****************************.************986 PP
2Myb_DNA-binding33.87.7e-1157100248
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Zmw_sc08975.1.g00010.1.am.mk  57 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 100
                                   68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.223154IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-18253IPR009057Homeodomain-like
SMARTSM007177.0E-15352IPR001005SANT/Myb domain
CDDcd001673.53E-12750No hitNo description
PfamPF139212.0E-13767No hitNo description
SuperFamilySSF466892.82E-2130105IPR009057Homeodomain-like
CDDcd116598.58E-3152103No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1454101IPR009057Homeodomain-like
PROSITE profilePS5129416.44355104IPR017930Myb domain
SMARTSM007171.7E-1255102IPR001005SANT/Myb domain
PfamPF118317.0E-34403535IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MIKGGVWKNT EDEILKAAVM KYGKNQWARI SSLLVRKSAK QCKARWYEWL DPSIKKTEWT  60
REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAACAKDENY EPNDDPRKLR  120
PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK QLEEARRLAS  180
LQKRRELKAA GIDTRKRNRK RKGIDYNAEI PFEKRPPPGF YDTVGEDKPP EHVQFPTTIE  240
DLEGKRRVDI ESQLRKQDIA RNKILQRQDA PAAIMQANKL NDPEAVTKRS KLMLPPPQIS  300
DHELEEIAKM GSAGDPSLVE ELGEGSTATR ALLSSYSQTP RLGMTPLRTP QRTPAGKVDA  360
IMMEAENLAR LRESQTPLLG GDNPDLHPSD FSGVTPRKKE IQTPNPMATP LASPGATPRI  420
GMTPSRDGNS FGLTPKATPF RDELRINEEV DMQDSAKLEL RRQAELRKSL RSGFASIPQP  480
KNEYQIVMPP ITEDEKEEAE EKIEEDMSDR LARERAEEQA RQEALLRKRS KVLQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.015355543Cell division cycle 5-like protein
5xjc_L0.015355543Cell division cycle 5-like protein
5yzg_L0.015355543Cell division cycle 5-like protein
5z56_L0.015355543Cell division cycle 5-like protein
5z57_L0.015355543Cell division cycle 5-like protein
5z58_L0.015355543Cell division cycle 5-like protein
6ff4_L0.015355543Cell division cycle 5-like protein
6ff7_L0.015355543Cell division cycle 5-like protein
6icz_L0.015355543Cell division cycle 5-like protein
6id0_L0.015355543Cell division cycle 5-like protein
6id1_L0.015355543Cell division cycle 5-like protein
6qdv_O0.015355543Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182201KRRELKAAGIDTRKRNRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975336.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLK3Y4Y00.0K3Y4Y0_SETIT; Uncharacterized protein
STRINGSi009268m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]