PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07953.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 313aa MW: 32600.1 Da PI: 8.2166

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07953.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.7	2.7e-15	33	93	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Zmw_sc07953.1.g00020.1.sm.mkhc 33 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 93 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.9	1.2e-34	32	95	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Zmw_sc07953.1.g00020.1.sm.mkhc 32 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 95 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-9	28	100	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.337	29	94	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-14	29	101	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-6	31	98	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-13	33	93	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEGSSNSPDR QSSGGSPEER GSGERQGSRE PVRSRWTPKP EQILILESIF NSGMVNPPKD 60 ETVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA AAAAAAAAAS SAANSHTAAA 120 SVALGVPSSG AAVHHPSAMG GSACRYEQQA SSSSSSGSTG GSSLGLFAFG AGVSGGTGGG 180 YFQTSCGASS PLGSGLIGDV DSGGGDDLFA ISRQMGFAES TVAPSSSLVP STAAQQQPQQ 240 YYSSQQLPTA TITVFINGVP MEVPRGPIDL RAMFGQDVML VHSTGTFLPV NDYGILTQSL 300 QMGESYFLVT RPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984518.2	1e-136	WUSCHEL-related homeobox 6
Swissprot	A2XG77	1e-105	WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBL	A0A368SRG4	1e-135	A0A368SRG4_SETIT; Uncharacterized protein
STRING	Pavir.Ia03448.1.p	1e-136	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109