PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06874.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 366aa MW: 40548.7 Da PI: 7.7234

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06874.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	86	146	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Zmw_sc06874.1.g00020.1.sm.mkhc 86 RQRWQPTPMQLQILENLFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 146 89***************99************************************97 PP
2	Wus_type_Homeobox	100.7	1.1e-32	85	148	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+l+++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Zmw_sc06874.1.g00020.1.sm.mkhc 85 ARQRWQPTPMQLQILENLFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 148 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-17	81	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.949	82	147	IPR001356	Homeobox domain
SMART	SM00389	6.3E-14	84	151	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.76E-18	85	149	IPR009057	Homeodomain-like
CDD	cd00086	2.03E-14	86	148	No hit	No description
Pfam	PF00046	2.6E-19	86	146	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEWGFRAAAA EAEERGGEPL GYVKVMTEGQ MEVLRKQISI YATICEQLVE MHRALTEHQD 60 SIAGMRFSNL YCDPLIVPGG HKITARQRWQ PTPMQLQILE NLFDQGNGTP SKQKIKEITA 120 ELSHHGQISE TNVYNWFQNR RARSKRKQAA VLPNNVESEA EADEESLTDK KPKSDMQLQQ 180 SKAVSVHNAD RISEMHHLQR DHLGGMMYGS NDNNLRSSGS SGQMSFYENI MSNPRIDQFS 240 GKVESTGLVV TSSPHFPAAF DRPWTPFYSW VGPKTAMLTN SWSLGTQSSS SPCAIAPRKR 300 HAGVPVIAAL SIRFLSPAPS SHAYGVPLTT VSPLLYPPGP LRTPPRPELS FSAQACSAEH 360 ASNTFD

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEWGFRAAAA EAEERGGEPL GYVKVMTEGQ MEVLRKQISI YATICEQLVE MHRALTEHQD  60
SIAGMRFSNL YCDPLIVPGG HKITARQRWQ PTPMQLQILE NLFDQGNGTP SKQKIKEITA  120
ELSHHGQISE TNVYNWFQNR RARSKRKQAA VLPNNVESEA EADEESLTDK KPKSDMQLQQ  180
SKAVSVHNAD RISEMHHLQR DHLGGMMYGS NDNNLRSSGS SGQMSFYENI MSNPRIDQFS  240
GKVESTGLVV TSSPHFPAAF DRPWTPFYSW VGPKTAMLTN SWSLGTQSSS SPCAIAPRKR  300
HAGVPVIAAL SIRFLSPAPS SHAYGVPLTT VSPLLYPPGP LRTPPRPELS FSAQACSAEH  360
ASNTFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456540.1	1e-145	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-114	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	C5XN90	1e-143	C5XN90_SORBI; Uncharacterized protein
STRING	Sb03g038080.1	1e-144	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]