PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06396.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 310aa    MW: 34155.1 Da    PI: 5.2567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06396.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.63.8e-202471148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT+eEd llv++v+++G g+W++ ar  g++Rt+k+c++rw++yl
  Zmw_sc06396.1.g00040.1.sm.mk 24 RGPWTAEEDVLLVNYVAKHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 71
                                  89********************************************97 PP
2Myb_DNA-binding42.41.7e-1377121146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg  T+ E++l++++++++G++ W+ Iar++  gRt++++k++w++
  Zmw_sc06396.1.g00040.1.sm.mk  77 RGDITPAEQLLILELHARWGNR-WSEIARRLLPGRTDNEVKNYWRT 121
                                   6778******************.*******999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.11975IPR017930Myb domain
SuperFamilySSF466891.54E-2922119IPR009057Homeodomain-like
SMARTSM007171.5E-162373IPR001005SANT/Myb domain
PfamPF002493.1E-182471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-232578IPR009057Homeodomain-like
CDDcd001671.12E-132671No hitNo description
SMARTSM007172.2E-1276125IPR001005SANT/Myb domain
PROSITE profilePS5129414.99376127IPR017930Myb domain
PfamPF002495.4E-1277121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2079125IPR009057Homeodomain-like
CDDcd001679.98E-1081121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVDQALAMSP AASVVSEDKG ELRRGPWTAE EDVLLVNYVA KHGEGRWNSL ARSAGLKRTG  60
KSCRLRWLNY LRPDVRRGDI TPAEQLLILE LHARWGNRWS EIARRLLPGR TDNEVKNYWR  120
TRVQRHAKRL RCDVSSRRFQ DVVRQVWVPR LVQRVQAESS SAATGGCRGG RDVVAPEATS  180
VMSAAAACQL MISAYSHPHY QQLDCCYTEP SQTTATAAGA MRPDDASSPP WSLLTTEEST  240
NQGGGVVQCS GATTGPVDGD DVAQEEEGVF GGSWSELLAT TGPDDGAMIG MRDFELGDFE  300
DNLWSLEDIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-272112524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806553.11e-107transcription factor MYB2-like
SwissprotQ10MB47e-79MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1E5VIK11e-107A0A1E5VIK1_9POAL; Transcription factor MYB108
STRINGSi022474m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]