PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05655.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 320aa MW: 34319.6 Da PI: 7.8098

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05655.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.7e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde l +v+ +G+g +W + +++ g++R++k+c++rw++yl Zmw_sc05655.1.g00020.1.sm.mkhc 14 RGPWSPEEDEVLRSYVQNHGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	36.3	1.3e-11	71	111	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T++Ed ++ + G++ W+ Ia++++ gRt++++k++w++ Zmw_sc05655.1.g00020.1.sm.mkhc 71 YTEQEDRIICSLYSSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111 69***************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.936	9	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.38E-27	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	1.32E-8	16	62	No hit	No description
PROSITE profile	PS51294	14.987	67	117	IPR017930	Myb domain
SMART	SM00717	2.4E-11	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-10	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-22	70	116	IPR009057	Homeodomain-like
CDD	cd00167	2.38E-8	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MGRAPCCDKA SVKRGPWSPE EDEVLRSYVQ NHGTGGNWIA LPHKAGLNRC GKSCRLRWLN 60 YLRPDIKHGG YTEQEDRIIC SLYSSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKALSI 120 QQQQQHQEYY GHHHQTGAVV RAHDRQAFAV TTPPPTQQGP CASMLPSPAS ASSAVSTVSG 180 GEACSFGAMY SSPSALQPPA LAPRYVDGAV PAPQQLHAPS LTEYSPAAPP PPPPQPTGGV 240 ANSWATTGGM TGLEDLFLPE LLGSGEFPHG DLFGGGFGSM LLQDRAPLSL QELAAYHFPN 300 AQAEMWADAK APAGLCHSLT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-26	14	117	7	108	B-MYB
1mse_C	4e-26	14	116	4	104	C-Myb DNA-Binding Domain
1msf_C	4e-26	14	116	4	104	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021311318.1	1e-131	uncharacterized protein LOC8068029
TrEMBL	A0A0A9DFU3	1e-147	A0A0A9DFU3_ARUDO; Uncharacterized protein
STRING	Si002350m	1e-124	(Setaria italica)
STRING	Sb03g031430.1	1e-124	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412