PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05510.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 226aa    MW: 24654.4 Da    PI: 10.8982
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05510.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.44e-191257147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + 
  Zmw_sc05510.1.g00010.1.am.mk 12 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 57
                                  79******************************.***********985 PP
2Myb_DNA-binding55.41.5e-1764107146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   r ++T+eEd  +++a+++lG++ W++Iar ++ gRt++ +k++w++
  Zmw_sc05510.1.g00010.1.am.mk  64 RRPFTAEEDAAILRAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 107
                                   679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.481762IPR017930Myb domain
SuperFamilySSF466898.99E-329105IPR009057Homeodomain-like
SMARTSM007179.6E-171160IPR001005SANT/Myb domain
PfamPF002492.4E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-251365IPR009057Homeodomain-like
CDDcd001671.74E-161456No hitNo description
SMARTSM007174.6E-1663111IPR001005SANT/Myb domain
PfamPF002492.3E-1564107IPR001005SANT/Myb domain
PROSITE profilePS5129421.39564113IPR017930Myb domain
CDDcd001672.55E-1366109No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2466113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAGAEAECDR IKGPWSPEED EALRRLVERH GARNWTAIGR GIPGRSGKSC RLRWCNQLSP  60
QVERRPFTAE EDAAILRAHA RLGNRWAAIA RLLPGRTDNA VKNHWNSSLK RKLPTATNNA  120
EAERPCKRVS PAPGSPTGSS DRSELSHGSV GGGGAQVFRP VPRPGWFDAI RAADVRPAPP  180
PTTTSRRDED PLTSLSLSLP GQQDQQGSSG FRHDSARSHF HELSPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-4291154110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180953.11e-114transcription factor MYB44-like
SwissprotQ9SN121e-64MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A3L6RS061e-120A0A3L6RS06_PANMI; Uncharacterized protein
STRINGOPUNC02G05820.11e-115(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]