PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05460.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 377aa    MW: 40621.1 Da    PI: 6.9349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05460.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-171360148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg W++eEd++lv++++ +G  +W++++++ g+ R++k+c++rw +yl
  Zmw_sc05460.1.g00030.1.am.mk 13 RGLWSPEEDKKLVRYITAHGHSCWSSVPKHAGLQRCGKSCRLRWINYL 60
                                  788*******************************************97 PP
2Myb_DNA-binding54.52.7e-1766109146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg +++eE+  ++da++ lG++ W+ Ia++++ gRt++++k++w++
  Zmw_sc05460.1.g00030.1.am.mk  66 RGTFSEEEERTIIDAHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109
                                   899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.184860IPR017930Myb domain
SuperFamilySSF466892.17E-2810107IPR009057Homeodomain-like
SMARTSM007174.6E-131262IPR001005SANT/Myb domain
PfamPF002491.4E-151360IPR001005SANT/Myb domain
CDDcd001671.48E-111660No hitNo description
PROSITE profilePS5129426.80761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2564116IPR009057Homeodomain-like
SMARTSM007172.5E-1665113IPR001005SANT/Myb domain
PfamPF002499.4E-1666109IPR001005SANT/Myb domain
CDDcd001671.42E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DKKLVRYITA HGHSCWSSVP KHAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS EEEERTIIDA HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLLPA SRSLLQGGKG ANPSNPAQFH LPNGAIANGC GAVEATTRPF TISSATKPAF  180
DALTVAPPME MAPALYDVPN PGMLMRQDQA AIATIPGYLY RDNGHGVLMS FSDQNAGLQG  240
SMDFMNGTSS SSSMDYAVGM QNGNGFSQGM PAAAFMDETA ETWAAAAIEP DMGAGMEVVQ  300
QPPPLPPSQR LVQGEVVSRP AAMHGGGAVA EKGLDMMDVS SVYSGVGANA AFDLELMESY  360
GLFCGGGNDM DHLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-34131157108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802845.10.0transcription factor MYB83-like
TrEMBLA0A2T7EWB60.0A0A2T7EWB6_9POAL; Uncharacterized protein
TrEMBLA0A3L6QSH70.0A0A3L6QSH7_PANMI; Transcription factor MYB12-like
STRINGSb02g033830.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545