PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05223.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 450aa MW: 50024.1 Da PI: 9.9757

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05223.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.5e-18	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+++G+++W++Ia++++ gR++k+c++rw++ Zmw_sc05223.1.g00030.1.am.mk 4 RGHWRPSEDEKLKELVALYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 899***************************.*********996 PP
2	Myb_DNA-binding	51.2	2.9e-16	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+ell+ ++ +G++ W+ Iar ++ gRt++ +k++w+ Zmw_sc05223.1.g00030.1.am.mk 56 RSPFSEEEEELLLASHRVHGNR-WAVIARLFP-GRTDNAVKNHWHV 99 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.97	1	54	IPR017930	Myb domain
SMART	SM00717	1.5E-15	3	52	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.83E-28	4	97	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-17	4	49	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-26	5	57	IPR009057	Homeodomain-like
CDD	cd00167	2.83E-14	7	48	No hit	No description
PROSITE profile	PS51294	19.902	55	105	IPR017930	Myb domain
SMART	SM00717	4.5E-15	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-13	56	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-20	58	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MCTRGHWRPS EDEKLKELVA LYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFS 60 EEEEELLLAS HRVHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRERTR MANKRCGAAA 120 GSAMENDSNP RSAMKDRPDV ANSMASLLDK YRSEVTGPFA IGHGSMEGYR STTDEDMTTD 180 KSVEFYDFLQ VNANSSDTKC GSSIEEQDEN RADDDQAEGG QVPFIDFLKV GASHPLPTPR 240 AYRAHHHRDT ADAASSAQHR PARARVIDRA GVAFRGAVSW PRPRERRDGR RFRSWPMRQS 300 SCRCRAHIAV LVADVTALTH SIDGRAGGGL VTGKAGTTTA GRLPFRYFMV VASRLRGRAS 360 ERRVPFRLRW VVGRPGLGVG GEAVEVGTDG WSGSTMSTWW SGERAADRSI DEDAMRCNVH 420 IVWVVGPGPR DGSVAIQGEI SHRDTSMGLG

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MCTRGHWRPS EDEKLKELVA LYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFS  60
EEEEELLLAS HRVHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRERTR MANKRCGAAA  120
GSAMENDSNP RSAMKDRPDV ANSMASLLDK YRSEVTGPFA IGHGSMEGYR STTDEDMTTD  180
KSVEFYDFLQ VNANSSDTKC GSSIEEQDEN RADDDQAEGG QVPFIDFLKV GASHPLPTPR  240
AYRAHHHRDT ADAASSAQHR PARARVIDRA GVAFRGAVSW PRPRERRDGR RFRSWPMRQS  300
SCRCRAHIAV LVADVTALTH SIDGRAGGGL VTGKAGTTTA GRLPFRYFMV VASRLRGRAS  360
ERRVPFRLRW VVGRPGLGVG GEAVEVGTDG WSGSTMSTWW SGERAADRSI DEDAMRCNVH  420
IVWVVGPGPR DGSVAIQGEI SHRDTSMGLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-31	4	104	7	107	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:23781226}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00145	DAP	Transfer from AT1G17950	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19674407, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:22197883}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008644561.1	1e-122	transcription factor MYB52 isoform X3
Swissprot	Q6R0C4	2e-73	MYB52_ARATH; Transcription factor MYB52
TrEMBL	A0A060D7S3	1e-121	A0A060D7S3_MAIZE; MYB transcription factor (Fragment)
STRING	GRMZM2G455869_P01	1e-122	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Shi D, et al. MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage. Plant Physiol., 2018. 176(4): p. 2737-2749 [PMID:29440562]