PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc05108.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 246aa MW: 27066.4 Da PI: 8.3786

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc05108.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv ++k +G g+W++ ++ g+ R++k+c++rw +yl Zmw_sc05108.1.g00070.1.am.mk 14 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	57.3	3.7e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEd+ +++++++lG++ W++Ia +++ gRt++++k++w+++ Zmw_sc05108.1.g00070.1.am.mk 67 RGNFTDEEDDTIIKLHQMLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.526	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.06E-30	13	108	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.11E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.662	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.5E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.11E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDDTIIK LHQMLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPKTHRPLN ETSTSAAPPR THRQDHTARP SCSPQTSLSA GSMPAETSRR ELDSCVDLNL 180 SIAPPQYQPA PLQGHEEEGQ AAGCSTMSSS TKGTAGTTNS EKERICLCFN GLGSQCDEGC 240 TCGSDG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-29	14	116	7	108	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977235.1	1e-107	myb-related protein Zm38
Swissprot	P81393	1e-90	MYB08_ANTMA; Myb-related protein 308
TrEMBL	K3YEC2	1e-105	K3YEC2_SETIT; Uncharacterized protein
STRING	Si012585m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]