PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04967.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 752aa    MW: 82996.9 Da    PI: 10.0704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04967.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-16305352148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd+ lv + +++G+g+W++++++ g+ R+ k+c++rw +yl
  Zmw_sc04967.1.g00030.1.am.mk 305 KGPWTPEEDLVLVSYLQEHGPGNWRAVPARTGLMRCSKSCRLRWTNYL 352
                                   79********************************************97 PP
2Myb_DNA-binding46.58.4e-15358403148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E++l+v++ ++lG++ W++Ia++++  Rt +++k++w+++l
  Zmw_sc04967.1.g00030.1.am.mk 358 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTNNDIKNFWNTHL 403
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-23296355IPR009057Homeodomain-like
PROSITE profilePS5129424.561300356IPR017930Myb domain
SuperFamilySSF466894.77E-28302399IPR009057Homeodomain-like
SMARTSM007175.9E-13304354IPR001005SANT/Myb domain
PfamPF002492.6E-15305352IPR001005SANT/Myb domain
CDDcd001671.55E-10307352No hitNo description
Gene3DG3DSA:1.10.10.604.4E-23356407IPR009057Homeodomain-like
PROSITE profilePS5129418.811357407IPR017930Myb domain
SMARTSM007179.5E-15357405IPR001005SANT/Myb domain
PfamPF002492.6E-13358403IPR001005SANT/Myb domain
CDDcd001676.31E-10360403No hitNo description
ProDomPD3156577.0E-10679752IPR020529Origin recognition complex, subunit 6, metazoa/plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0005664Cellular Componentnuclear origin of replication recognition complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MSFQVVATWL STARQYATVP VPPRTGPGPW HGDAPMPYAA AHCGSRRRRR LSTLQGALEQ  60
CGRAHEREYP AEHCNECVCR INAFAMALGS CRAAALWRVR LGETGDVSTW SPESSSDYPR  120
RETPRSAGRD GLRATLRVGK REMRTAARPE PDRVRPRGVE TGQATHPQRL NAKDGASSHG  180
TALRHRTALE LSWLVILGLL AIAQRERDRL TLVSAVVWPR PETGVSAYKR TNNSRVATLN  240
RGHHDSHSSE RKLLFFQLWL ITHQFHAHFQ SRACRAKTQQ KGSLLDRPPS TMGRPPCCDK  300
EGVKKGPWTP EEDLVLVSYL QEHGPGNWRA VPARTGLMRC SKSCRLRWTN YLRPGIKRGN  360
FTDQEEKLIV HLQALLGNRW AAIASYLPER TNNDIKNFWN THLKRKLQST GGDAAAKPTA  420
HRPLASSKWQ WERRLQTDIN MARRALREAL TPLDDVVKTP QPDAAGAETG GDVDSSASCS  480
SGASQWFPSM ASAPYVLTTE NISRMLDCWS ASGKGRRGGS GKGTPGGEES ASGSSDASEV  540
SYGGAVAPDT GHLFEYETKP AEPAQQTQLS AIESWLFEDD SNFHHVQSAS LLDAAMDYPP  600
AQLIHEKSSN TARERHRIPT SRHSPRSPKQ SRNRSVRRSY FILPSKDAQT SPSLIPDLLL  660
TETESPAAMD MLIAARLGLC DVTFESSVLG IVSACLPPPP QAPPVHFRSF AHIRVDASLI  720
SALCRTTLNV RELGIQFGCV RRIPLVQKGL AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-243054074105C-Myb DNA-Binding Domain
1msf_C8e-243054074105C-Myb DNA-Binding Domain
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296