PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04743.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 958aa MW: 105554 Da PI: 8.7521

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04743.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.1e-15	608	655	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ ++++ G +W++ ++ g+ R++k+c++rw +yl Zmw_sc04743.1.g00060.1.am.mk 608 KGSWTPEEDMRLIAYIQKCGHANWRALPKQAGLLRCGKSCRLRWINYL 655 799***************************99**********97 PP
2	Myb_DNA-binding	46.9	6.3e-15	661	710	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46 rg++T eE+e +++++++lG++ +W++Ia++++ gRt++++k+ w++ Zmw_sc04743.1.g00060.1.am.mk 661 RGNFTVEEEESIIKLHAMLGNKydaalQWSKIAACLP-GRTDNEIKNVWNT 710 89*********************************.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05056	5.6E-70	5	195	IPR007750	Protein of unknown function DUF674
Gene3D	G3DSA:1.10.10.60	1.7E-22	599	658	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.658	603	659	IPR017930	Myb domain
SuperFamily	SSF46689	1.21E-26	605	708	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-12	607	657	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-14	608	655	IPR001005	SANT/Myb domain
CDD	cd00167	9.75E-10	610	655	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-22	659	715	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-11	660	714	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.068	660	716	IPR017930	Myb domain
Pfam	PF00249	4.0E-13	661	710	IPR001005	SANT/Myb domain
CDD	cd00167	2.70E-9	663	712	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence Send to blast
MSKKEEPTIE AKLFIVREKG KVLFAESDKE FVDVLLSFLT LPLGTVVRLL GKQSQIGCLD 60 QIYKSVEELS SDYFQTKACK SMVLSPRNAA SSHCDRLKIN VDDSNPWAVY VCKDEKCRYG 120 EFSLVPDAIC KCGKVMQYAG NMPVKDRNLA PCPGGGNTAT SVFVKGGYTF IITDDLMVAP 180 SSTSLVMSLC ERSEIHGVTC DGERRARTVG ERREVSTCSD VDGGRRSNLS DSSSASAVKR 240 LAIFHTRFDN KENGVTRAET RRLVDTPTGD YAEANGLRSR SRPNRNWKPR IPCNISHPAV 300 SHHRAGAACQ SIGLARPTEC SAHVSPAPRL SLPGDAAVMG LAVRRESSSQ LAAAARDDGS 360 VRGFTPASET AQTPAAFGVA LYHPLARTWR RSYHPRVLHQ FFQLPLSFAI RGKAGWRRRL 420 WVPWSGGGAQ TDLANIDERT LMLRPFHPSD TIAVRSNVSP HRVSATRYNK SNSDNVRDLQ 480 DERKQACVKG CPRRPCRGNQ RTRNAGRTLR FVGNWRGLQK APKREAGSVV EFGEAGLRRW 540 VRACREGDTA AACVTCRTRQ RTRREPPPRA RHRRREQSIT RRRSLRCLWP GLMGKGRAPC 600 CAKVGLNKGS WTPEEDMRLI AYIQKCGHAN WRALPKQAGL LRCGKSCRLR WINYLRPDLK 660 RGNFTVEEEE SIIKLHAMLG NKYDAALQWS KIAACLPGRT DNEIKNVWNT RLKKRVAPCG 720 EQEHTAKKKK KKNSAGAEAT VPSPSPASST TTTTNCSSGD SGEQQSNASC KEPDELDLKT 780 LNIPTLDTAG FDFDFDFDLD MLVDHPAPEL HHPSLSVPTS PCASSTSPPA PATNVDGLLA 840 LPEIDIDQEL WSIIDGDGAC SFTETPAPPC HGNATEPDAA TTSREEDGKE WWLENLEREL 900 GLWGPVEDYQ CPAGPLGLAE PDLPPMVQEQ DPVTCYFQAG STAAPLQGPE LSSNQMTL

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence Send to blast

MSKKEEPTIE AKLFIVREKG KVLFAESDKE FVDVLLSFLT LPLGTVVRLL GKQSQIGCLD  60
QIYKSVEELS SDYFQTKACK SMVLSPRNAA SSHCDRLKIN VDDSNPWAVY VCKDEKCRYG  120
EFSLVPDAIC KCGKVMQYAG NMPVKDRNLA PCPGGGNTAT SVFVKGGYTF IITDDLMVAP  180
SSTSLVMSLC ERSEIHGVTC DGERRARTVG ERREVSTCSD VDGGRRSNLS DSSSASAVKR  240
LAIFHTRFDN KENGVTRAET RRLVDTPTGD YAEANGLRSR SRPNRNWKPR IPCNISHPAV  300
SHHRAGAACQ SIGLARPTEC SAHVSPAPRL SLPGDAAVMG LAVRRESSSQ LAAAARDDGS  360
VRGFTPASET AQTPAAFGVA LYHPLARTWR RSYHPRVLHQ FFQLPLSFAI RGKAGWRRRL  420
WVPWSGGGAQ TDLANIDERT LMLRPFHPSD TIAVRSNVSP HRVSATRYNK SNSDNVRDLQ  480
DERKQACVKG CPRRPCRGNQ RTRNAGRTLR FVGNWRGLQK APKREAGSVV EFGEAGLRRW  540
VRACREGDTA AACVTCRTRQ RTRREPPPRA RHRRREQSIT RRRSLRCLWP GLMGKGRAPC  600
CAKVGLNKGS WTPEEDMRLI AYIQKCGHAN WRALPKQAGL LRCGKSCRLR WINYLRPDLK  660
RGNFTVEEEE SIIKLHAMLG NKYDAALQWS KIAACLPGRT DNEIKNVWNT RLKKRVAPCG  720
EQEHTAKKKK KKNSAGAEAT VPSPSPASST TTTTNCSSGD SGEQQSNASC KEPDELDLKT  780
LNIPTLDTAG FDFDFDFDLD MLVDHPAPEL HHPSLSVPTS PCASSTSPPA PATNVDGLLA  840
LPEIDIDQEL WSIIDGDGAC SFTETPAPPC HGNATEPDAA TTSREEDGKE WWLENLEREL  900
GLWGPVEDYQ CPAGPLGLAE PDLPPMVQEQ DPVTCYFQAG STAAPLQGPE LSSNQMTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-23	606	716	25	128	MYB TRANSFORMING PROTEIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	712	731	KKRVAPCGEQEHTAKKKKKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98