PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04544.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 266aa    MW: 28749.3 Da    PI: 5.846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04544.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.25.1e-151461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g WT+eEd +lv     +G  +W+++++  g+ R++k+c++rw +yl
  Zmw_sc04544.1.g00020.1.sm.mk 14 KGTWTAEEDHKLVTFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 61
                                  799*****************************99************97 PP
2Myb_DNA-binding54.33.1e-1770111447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    + eE+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Zmw_sc04544.1.g00020.1.sm.mk  70 LSDEEEALVIDLHAQLGNR-WSKIAARIP-GRTDNEIKNHWNTH 111
                                   589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-20562IPR009057Homeodomain-like
PROSITE profilePS5129414.095961IPR017930Myb domain
SuperFamilySSF466894.87E-2611108IPR009057Homeodomain-like
SMARTSM007179.2E-111363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
CDDcd001671.27E-81661No hitNo description
PROSITE profilePS5129427.43562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.6E-2563116IPR009057Homeodomain-like
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PfamPF002495.2E-1570111IPR001005SANT/Myb domain
CDDcd001671.13E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGTWTAE EDHKLVTFLL SHGHCCWRLV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SDEEEALVID LHAQLGNRWS KIAARIPGRT DNEIKNHWNT HIKKKLRKMG  120
IDLVTHRPLS PAARSGEPLT QQQCQDPPQD EPKTSSQRPA GGNEDDDGNE EAPVSAAQPQ  180
LAAASPASAA ATVSPSCSSS ASASVTTTPG ADVAAWSDPV DLFEVDGIMD MDWAGILSGC  240
GGDGAGISVD LFDHYPGDGF DQQVWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953828.11e-137protein ODORANT1
SwissprotQ9C7U72e-82MYB20_ARATH; Transcription factor MYB20
TrEMBLK3Z1081e-136K3Z108_SETIT; Uncharacterized protein
STRINGSi020225m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]