PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04468.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 236aa MW: 25244.1 Da PI: 8.4823

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04468.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	6.9e-21	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ Zmw_sc04468.1.g00030.1.am.mk 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66 58***************99************************************97 PP
2	Wus_type_Homeobox	121.2	4.1e-39	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ Zmw_sc04468.1.g00030.1.am.mk 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67 689***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.463	2	67	IPR001356	Homeobox domain
SMART	SM00389	6.8E-6	4	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-11	4	70	IPR009057	Homeodomain-like
CDD	cd00086	5.43E-4	5	60	No hit	No description
Pfam	PF00046	1.5E-18	6	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.8E-8	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KARERQRLRR RLCARHQQQY AASGAPPSAA DGSGAAAGVH PSYAPTSFIM PQPHHLGYLG 120 QQATTLPVVH HHPAAAAGGG GGGGNNNKQI MAAAAAGAYD GGAALYNNTS HQQEEWTMEL 180 SNCSASPGSS DDGTMLPPCC RRPLRTLDLF PTKSSTAGLK DECGSSKSSS CSTSTN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105160.1	1e-66	WUSCHEL-related homeobox 3A
Swissprot	Q70UV1	8e-68	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	B6TVS2	6e-66	B6TVS2_MAIZE; WUSCHEL-related homeobox 3B
STRING	GRMZM2G069028_P01	4e-66	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]