PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc04014.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 533aa MW: 56992.2 Da PI: 10.4501

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc04014.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	256	303	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Zmw_sc04014.1.g00030.1.am.mk 256 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 303 79********************************************97 PP
2	Myb_DNA-binding	50.3	5.4e-16	309	354	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Zmw_sc04014.1.g00030.1.am.mk 309 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 354 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-24	247	306	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.846	251	303	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-29	253	350	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-13	255	305	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-16	256	303	IPR001005	SANT/Myb domain
CDD	cd00167	4.01E-11	258	303	No hit	No description
PROSITE profile	PS51294	24.722	304	358	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-24	307	358	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-16	308	356	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	309	354	IPR001005	SANT/Myb domain
CDD	cd00167	1.46E-11	311	354	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MDRIAGSPPP PLLRFVLSVL VSRRSEADFN VKPCRGTTKS DPPQRHGQRN YRCAGSHVVP 60 SGSHPELCGD EGSVGDTPRF PGRTHVGVAS RVHRETSTTT RASSCRRNHL HPCLRSPAGT 120 RFGLFCPHQT GKHRDRRVRT SGRREPVHAP GFSGGTGRSL VGAVLALPLA ASSSFFPPGP 180 TRGQTRWGPR SAAVTHSQVR ATAYITRPCA APTGPRPSLD RASPSLLGPL VSRGVVGWEE 240 RRMGRPPCCQ KGGVKKGPWT PEEDLVLVSY VQEHGPGNWR AVPTNTGLMR CSKSCRLRWT 300 NYLRPGIKRG NFTDQEEKLI VHLQALLGNR WAAIASYLPE RTDNDIKNYW NTHLKKKLGK 360 MSVGGEDEES KLTAPKGQWE RQLQTDIHTA RQALRGALSM DTSSPAPAAK PEAHAPAPVG 420 QATYASSAEN IARLLEGWMR PGAGNGGKTS SGPSGSSPSA VSGEGASAAS QSGAARTPPE 480 GSTGANGKAE DRGAVVTPGP AFSMLENWLL DDGMEHGDVG IMGMPLADPC DFF

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MDRIAGSPPP PLLRFVLSVL VSRRSEADFN VKPCRGTTKS DPPQRHGQRN YRCAGSHVVP  60
SGSHPELCGD EGSVGDTPRF PGRTHVGVAS RVHRETSTTT RASSCRRNHL HPCLRSPAGT  120
RFGLFCPHQT GKHRDRRVRT SGRREPVHAP GFSGGTGRSL VGAVLALPLA ASSSFFPPGP  180
TRGQTRWGPR SAAVTHSQVR ATAYITRPCA APTGPRPSLD RASPSLLGPL VSRGVVGWEE  240
RRMGRPPCCQ KGGVKKGPWT PEEDLVLVSY VQEHGPGNWR AVPTNTGLMR CSKSCRLRWT  300
NYLRPGIKRG NFTDQEEKLI VHLQALLGNR WAAIASYLPE RTDNDIKNYW NTHLKKKLGK  360
MSVGGEDEES KLTAPKGQWE RQLQTDIHTA RQALRGALSM DTSSPAPAAK PEAHAPAPVG  420
QATYASSAEN IARLLEGWMR PGAGNGGKTS SGPSGSSPSA VSGEGASAAS QSGAARTPPE  480
GSTGANGKAE DRGAVVTPGP AFSMLENWLL DDGMEHGDVG IMGMPLADPC DFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-25	256	358	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-25	256	358	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574549.1	1e-129	transcription factor MYB30
Swissprot	P81392	1e-100	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A3L6PM73	1e-135	A0A3L6PM73_PANMI; Uncharacterized protein
STRING	Pavir.Fa00895.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]