PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc04011.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 35079.6 Da PI: 8.6585 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl Zmw_sc04011.1.g00120.1.sm.mkhc 14 KGPWSPEEDTKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd +++ + G++ W+ Ia+ ++ gRt++++k++w++ Zmw_sc04011.1.g00120.1.sm.mkhc 69 GGFSEEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.156 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.72E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.34E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.174 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.45E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGRAPCCDKA TVKKGPWSPE EDTKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIRHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK 120 QSRKDQRQQQ QHFMRQAGAS DGMKQEANGG ASGSSSMAEA AYSWHQQATT VPMQQPTPGI 180 AMDGHRPGDG VDESIRKLLH RLKLEGSPFA ALPQFVPPPL YEGSPSFAPT PCQVEITSLH 240 EAGVQCSNGL PSLEQDQNFH FNQVKLDGLD FFFGMGDQSI RWSEVNPLAC TNNTVASSSQ 300 GMQQYGLADE PANLGIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981607.1 | 1e-170 | transcription factor MYB4 | ||||
TrEMBL | K4ACS4 | 1e-168 | K4ACS4_SETIT; Uncharacterized protein | ||||
STRING | Si036681m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |