PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03942.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 345aa MW: 38592.2 Da PI: 10.474

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03942.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.8	2.9e-09	94	139	3	47
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +WT+ E +++ +a + l + +W+++ar ++ gRt +++++++++ Zmw_sc03942.1.g00020.1.sm.mkhc 94 SWTAKENKQFERALAALDLRrpDWEKVARAIP-GRTVGEIVDHYRSL 139 7***************99********.*********975 PP
2	Myb_DNA-binding	47.5	4.2e-15	209	253	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + k++G+g+W++I+r++ +Rt+ q+ s+ qky Zmw_sc03942.1.g00020.1.sm.mkhc 209 PWTEEEHRLFLLGLKKYGKGDWRSISRYFVHTRTPTQVASHAQKY 253 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.578	90	144	IPR017884	SANT domain
SMART	SM00717	2.0E-5	91	142	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-4	93	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-8	94	146	IPR009057	Homeodomain-like
CDD	cd00167	4.07E-7	94	139	No hit	No description
Pfam	PF00249	7.3E-7	94	139	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.812	202	258	IPR017930	Myb domain
SuperFamily	SSF46689	6.9E-18	203	258	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-17	205	256	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-13	206	256	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-12	206	252	IPR009057	Homeodomain-like
CDD	cd00167	6.57E-11	209	254	No hit	No description
Pfam	PF00249	5.0E-13	209	253	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MQLETRRGEG RGNSPSEKTE NRGRSPFVLL APEDILFLPR EIKERRSSAE QRSTQKNGTA 60 SALEMMREAY MEVLPAMDHY ASRSNNWFLG PPRSWTAKEN KQFERALAAL DLRRPDWEKV 120 ARAIPGRTVG EIVDHYRSLE VDVRRIESGA MMPFSGYGGG GGANAFTLQW DGKGGHGAGD 180 FRHGYRFAGG CGKRHPGLTP EQERKKGVPW TEEEHRLFLL GLKKYGKGDW RSISRYFVHT 240 RTPTQVASHA QKYFIRRNSG GKDKRRSSIH DITTVNLNND QTPSPSQSSL ITNQPKASDQ 300 TAAASQFSLS ADTKQHGSAW SLAFEPLLPQ ASPLKRLNSQ LEAIS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MQLETRRGEG RGNSPSEKTE NRGRSPFVLL APEDILFLPR EIKERRSSAE QRSTQKNGTA  60
SALEMMREAY MEVLPAMDHY ASRSNNWFLG PPRSWTAKEN KQFERALAAL DLRRPDWEKV  120
ARAIPGRTVG EIVDHYRSLE VDVRRIESGA MMPFSGYGGG GGANAFTLQW DGKGGHGAGD  180
FRHGYRFAGG CGKRHPGLTP EQERKKGVPW TEEEHRLFLL GLKKYGKGDW RSISRYFVHT  240
RTPTQVASHA QKYFIRRNSG GKDKRRSSIH DITTVNLNND QTPSPSQSSL ITNQPKASDQ  300
TAAASQFSLS ADTKQHGSAW SLAFEPLLPQ ASPLKRLNSQ LEAIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-14	90	162	6	78	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817822.1	1e-137	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	5e-74	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A5HJS5	1e-149	A5HJS5_9POAL; MYB_Al protein
STRING	Pavir.Ea00523.1.p	1e-129	(Panicum virgatum)
STRING	Si002426m	1e-129	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7886	33	48

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]