PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03643.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 251aa    MW: 27982.9 Da    PI: 5.0406
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03643.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.6e-15552148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Zmw_sc03643.1.g00090.1.sm.mk  5 KGSWTEEEDAQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 52
                                  799*******************************************97 PP
2Myb_DNA-binding51.52.3e-1658101146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rgr T++E+ l+v++++++G++ W++Iar ++ gRt++++k++w++
  Zmw_sc03643.1.g00090.1.sm.mk  58 RGRITADEERLIVELHAKWGSR-WSRIARSLP-GRTDNEIKNFWRT 101
                                   899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.405156IPR017930Myb domain
SuperFamilySSF466893.74E-27299IPR009057Homeodomain-like
SMARTSM007173.9E-13454IPR001005SANT/Myb domain
PfamPF002491.8E-13552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-20659IPR009057Homeodomain-like
CDDcd001674.23E-10752No hitNo description
PROSITE profilePS5129419.65157107IPR017930Myb domain
SMARTSM007172.4E-1457105IPR001005SANT/Myb domain
PfamPF002493.9E-1458101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2260106IPR009057Homeodomain-like
CDDcd001671.81E-1062101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MTMRKGSWTE EEDAQLVWFV RLFGERRWDF LAKVSGLKRT GKSCRLRWVN YLHPDLRRGR  60
ITADEERLIV ELHAKWGSRW SRIARSLPGR TDNEIKNFWR TRMRKQKALG DQRQCKDDRS  120
TTTVAAASPS SSSVTTAFFS GGSPNSGGTA TSSSTVTESA QQGGSGEDDD EAELDEASTL  180
TTASQHQQEC CYTMDQLWNE IAAAEAAASY SMVDGWGIGH AAAPAEPASM PSPVWEFCSD  240
YSLWMIDDEG Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2651064104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-25510658158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-25510658158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-2651064104C-Myb DNA-Binding Domain
1msf_C5e-2651064104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680579.14e-91LOW QUALITY PROTEIN: transcription factor MYB59
TrEMBLK3ZD381e-100K3ZD38_SETIT; Uncharacterized protein
STRINGSi024470m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169