PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03504.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 224aa    MW: 25113 Da    PI: 10.9662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03504.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-18136183148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT  Ed +lvd+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Zmw_sc03504.1.g00040.1.am.mk 136 KGPWTSAEDSILVDYVKKHGEGNWNAVQKNTGLSRCGKSCRLRWANHL 183
                                   79******************************************9996 PP
2Myb_DNA-binding23.99.5e-08189218131
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartm 31 
                                   +g++T++E+ l+++++ ++G++ W++ a+++
  Zmw_sc03504.1.g00040.1.am.mk 189 KGAFTPDEERLIIQLHSKMGNK-WARMAAHV 218
                                   799*******************.*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.31131187IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-23132186IPR009057Homeodomain-like
SuperFamilySSF466894.97E-25133218IPR009057Homeodomain-like
SMARTSM007177.8E-15135185IPR001005SANT/Myb domain
PfamPF002498.5E-16136183IPR001005SANT/Myb domain
CDDcd001671.94E-11138183No hitNo description
Gene3DG3DSA:1.10.10.608.2E-14187218IPR009057Homeodomain-like
SMARTSM007170.94188224IPR001005SANT/Myb domain
PROSITE profilePS512949.918188224IPR017930Myb domain
PfamPF002496.5E-7189218IPR001005SANT/Myb domain
CDDcd001670.00245191218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPVPWACAEL QKWRRALLPL PPRSKKEKRL GEILLRFPLL SSPSFQQSAA ELTRAGEPLV  60
ELNSAHPGLD RLRRLRDSVS WRVSTTGKRA VSRSVSHRAM FRVKSESDCE MVPLDQMDSP  120
AADDGGSPHR GPPLKKGPWT SAEDSILVDY VKKHGEGNWN AVQKNTGLSR CGKSCRLRWA  180
NHLRPNLKKG AFTPDEERLI IQLHSKMGNK WARMAAHVSA MLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-2113121522105MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564452.13e-71transcription factor GAMYB
SwissprotA2WW871e-70GAM1_ORYSI; Transcription factor GAMYB
TrEMBLI1HSP46e-70I1HSP4_BRADI; Uncharacterized protein
STRINGBRADI2G53010.11e-70(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664