PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03484.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 329aa MW: 35699.2 Da PI: 8.3177

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03484.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.4e-17	58	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W+++++ g+ R+ k+c++rw +yl Zmw_sc03484.1.g00090.1.am.mk 58 KGPWTPEEDLVLVSYVQEHGPGNWRAVPAATGLARCSKSCRLRWTNYL 105 79********************************************97 PP
2	Myb_DNA-binding	45.1	2.3e-14	111	156	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ Ed l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l Zmw_sc03484.1.g00090.1.am.mk 111 RGGFSDREDRLIVHLQALLGNR-WAAIASYLP-DRTDNDVKNYWNTHL 156 78899***************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-23	49	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.589	53	109	IPR017930	Myb domain
SuperFamily	SSF46689	5.5E-30	55	152	IPR009057	Homeodomain-like
SMART	SM00717	4.3E-13	57	107	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-16	58	105	IPR001005	SANT/Myb domain
CDD	cd00167	2.72E-11	60	105	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-22	109	160	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.043	110	160	IPR017930	Myb domain
SMART	SM00717	5.9E-15	110	158	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-13	111	156	IPR001005	SANT/Myb domain
CDD	cd00167	6.02E-12	114	156	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MPRSNPVLRA VCINKIPWTL VFAYTTHGNC CRSQLLVGVV ASIPMGRPPC CDREGVKKGP 60 WTPEEDLVLV SYVQEHGPGN WRAVPAATGL ARCSKSCRLR WTNYLRPGIR RGGFSDREDR 120 LIVHLQALLG NRWAAIASYL PDRTDNDVKN YWNTHLKKKL GALQQQQQQP SGTKGKWELR 180 LQTDIDLARR ALREALSVDV SGTTTPTTTT SPPVRSNEPA AVQAPSYALT AGNFATMLDG 240 WATTTTPAES ASGSSSDLTD CSAAGSTSTS ASNRAARDGG PLFRREADAD VPLSAIESWL 300 LGDDGCGEQL VSAQEGLLLD ATLHYGFYR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	5e-27	56	160	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794825.1	1e-117	transcription factor MYB30-like
Swissprot	P81392	6e-91	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2T7CC45	1e-116	A0A2T7CC45_9POAL; Uncharacterized protein
STRING	GRMZM2G098179_P01	1e-101	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]