PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03384.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 348aa    MW: 37804.1 Da    PI: 7.0333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03384.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.4e-161462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W+teEd  l+ +++++G+g +W   ++++g++R++k+c++rw++yl
  Zmw_sc03384.1.g00070.1.am.mk 14 KGPWSTEEDAVLKAYIEEHGTGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62
                                  79*********************************************97 PP
2Myb_DNA-binding40.46.9e-1369111246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +T+eEd ++  +    G++ W+tIa+ +  gRt++++k++w++
  Zmw_sc03384.1.g00070.1.am.mk  69 GGFTKEEDRIICSLYISIGSR-WSTIAAQLS-GRTDNDVKNHWNT 111
                                   569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.027962IPR017930Myb domain
SuperFamilySSF466892.8E-2613109IPR009057Homeodomain-like
SMARTSM007173.4E-121364IPR001005SANT/Myb domain
PfamPF002494.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-231569IPR009057Homeodomain-like
CDDcd001675.17E-91662No hitNo description
PROSITE profilePS5129421.02763117IPR017930Myb domain
SMARTSM007171.5E-1067115IPR001005SANT/Myb domain
PfamPF002492.3E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2170117IPR009057Homeodomain-like
CDDcd001676.02E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRAPCCDKA MVKKGPWSTE EDAVLKAYIE EHGTGGNWIQ LPHKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FTKEEDRIIC SLYISIGSRW STIAAQLSGR TDNDVKNHWN TKLKRRLLGG  120
GRRPRIGERL LLTDSTSSQT LNSFTASALE RMQLGVRLHG RHERLESSPA FTLYNYSSSL  180
GGVGATPTWT NPLPSPSPSP AASDSSEMQL RQLPRATSAG HSGFWSHMQS SFSHASAGMQ  240
GSLDGTCTPP VSTSSAETAL AGMESSSSTP TASSASATFG SMEYEIDMLL RQIQSFEEDG  300
YTGEVANRVD CFFGEVDHVT LDGTAGSWSS CSTPGVDSVF QDFVQGYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802913.11e-155transcription factor MYB36-like
SwissprotQ9FKL27e-75MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A3L6T8501e-157A0A3L6T850_PANMI; Transcription factor MYB35-like
STRINGPavir.Aa03183.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]