PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03175.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB

Protein Properties

Length: 296aa MW: 31554 Da PI: 8.4861

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03175.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ede l+ +vk +Ggg+W+ ++++ g++R++k+c++rw++yl Zmw_sc03175.1.g00020.1.am.mk 14 RGAWTSKEDEVLAAYVKAHGGGRWREVPQRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	45	2.6e-14	67	115	1	47
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Zmw_sc03175.1.g00020.1.am.mk 67 RGNISDDEEDLIIRLHKLLGNRsmsAWSLIAGRLP-GRTDNEIKNYWNST 115 78999****************************.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-23	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.164	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.07E-26	11	112	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.13E-10	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.1E-21	65	118	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.901	66	120	IPR017930	Myb domain
SMART	SM00717	4.2E-13	66	118	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-12	67	115	IPR001005	SANT/Myb domain
CDD	cd00167	1.93E-10	71	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGRRACCAKE GVKRGAWTSK EDEVLAAYVK AHGGGRWREV PQRAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI SDDEEDLIIR LHKLLGNRSM SAWSLIAGRL PGRTDNEIKN YWNSTLSRRP 120 GSGAAGSGVS TQDAGYHSTP MASASCDTGQ TSAPVGDRDS GSDGTAAEAV WAPKPVRCTG 180 GLFFLRDAAP QAETRTGGGE RSDDCSSSAA SASGNADEPC FSGGADWTDD VRALASFLES 240 DEEWVRATRF GSAAGLVKGF SKSNSSPKAS SSPCYSLVPS TAIFSSHMDA MVFQQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-23	14	119	7	107	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812125.1	1e-106	anthocyanin regulatory C1 protein-like
Swissprot	P10290	2e-93	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	A0A2S3HKW7	1e-105	A0A2S3HKW7_9POAL; Uncharacterized protein
STRING	Sb10g006700.1	1e-101	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]