PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03117.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 842aa    MW: 91017.6 Da    PI: 9.9102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03117.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-10569630148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..............TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..............kgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++lv     +G  +W+ +++                 + R++k+c++rw +yl
  Zmw_sc03117.1.g00040.1.am.mk 569 KGPWTAEEDQKLVGFLLTHGHCCWRVVPKLAVdrcvcltreaaragLLRCGKSCRLRWTNYL 630
                                   79**********************************************************97 PP
2Myb_DNA-binding52.51.1e-16640680547
                                   -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   + +E++l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Zmw_sc03117.1.g00040.1.am.mk 640 SDDEEKLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 680
                                   89****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-18560631IPR009057Homeodomain-like
PROSITE profilePS500909.477564630IPR017877Myb-like domain
SuperFamilySSF466893.96E-23566677IPR009057Homeodomain-like
SMARTSM007175.0E-8568632IPR001005SANT/Myb domain
PfamPF002492.4E-9569630IPR001005SANT/Myb domain
CDDcd001674.32E-6571630No hitNo description
PROSITE profilePS5129426.946631685IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-23632685IPR009057Homeodomain-like
SMARTSM007173.9E-15635683IPR001005SANT/Myb domain
CDDcd001675.44E-12640681No hitNo description
PfamPF002491.8E-14640680IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MVRRREVVPY FWYPAQPAAE PRGTAAVQLG ATLLSPTARG WVMAELDHRG KLKGMREEEK  60
TEGNKRRSAT DCHICSKGRG HFPATPVTRA ASFLLPLGRA PPVSCYPCDA RRQFPATPVT  120
RAANFLPRSI YTTPAQNCSR GSHPVTKKRL HDQSRTLPLC LGAGQRFQRR PFRALDSARR  180
GGGDIGTRVP RARVARAMDL ASIRTIVAIF PQPAARSLTT QLISAPSAAA PGSEQTQIIS  240
TLESSRSNLD FVKTTRVAFT RRGEKVEHSI ELPLFPFSSR LDPCTTTFSF KLGSSTSSTR  300
LSYVAVALSP ARAGRRAKAS ATQWRAVASS RRRKHRGSPA VECASGRAEE CYRSRGSLQK  360
VNAAASEVDS RPARGLCFLL GGGGIREEIL AGRSWELAGA VACAGAGPLF SVELPRRRAQ  420
VYVAQSRAQI FRVPKQVRAD DIKNRHCLKI GEEVGTFVLG NRGSHKIPCP FCPVKGAIGM  480
APSETGSHVR RAPASLAATW GAAPAGSLVF VSINPSPCAA PSLPGTETGS SEQAIRHCAA  540
REAAPGENER AVYCCTSWQP CCDKVGVKKG PWTAEEDQKL VGFLLTHGHC CWRVVPKLAV  600
DRCVCLTREA ARAGLLRCGK SCRLRWTNYL RPDLKRGLLS DDEEKLVIDL HAQLGNRWSK  660
IAARLPGRTD NEIKNHWNTH IRKKLLRMGI DPVTHQPLPQ APASPVQEQK EHAEPPPPPP  720
PQPQPQQAQE QPLRTDGEAP QEVAAEGRQD LPLIQPDEIP APPPAASSVS SASGSVFSPS  780
CSSSASASGV EATEWPEPMY LFGMDGIMDA GWGGLFPGDG GVSLDPFDQY PGGGFDQGDD  840
WL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-265696857108B-MYB
1h88_C4e-2654868538159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-2654868538159MYB PROTO-ONCOGENE PROTEIN