PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03039.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 424aa    MW: 46581.8 Da    PI: 7.4841
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03039.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-1983130148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WTt+Ed+llv+ v+q+G g+W++++++ g++R++k+c++rw +yl
  Zmw_sc03039.1.g00100.1.am.mk  83 KGPWTTQEDKLLVEHVQQHGEGRWNSVSKHTGLKRSGKSCRLRWVNYL 130
                                   79********************************************97 PP
2Myb_DNA-binding53.45.9e-17136180147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Zmw_sc03039.1.g00100.1.am.mk 136 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 180
                                   8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.61478130IPR017930Myb domain
SuperFamilySSF466891.57E-2981177IPR009057Homeodomain-like
SMARTSM007179.3E-1782132IPR001005SANT/Myb domain
PfamPF002494.1E-1883130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2484137IPR009057Homeodomain-like
CDDcd001674.42E-1285130No hitNo description
PROSITE profilePS5129425.396131185IPR017930Myb domain
SMARTSM007176.6E-16135183IPR001005SANT/Myb domain
PfamPF002491.8E-14136180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-23138183IPR009057Homeodomain-like
CDDcd001672.29E-10140181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MREPASSGGL GRGLRRGGER LGETSSPVPH IYAAAAHSSL IVRQHKRKER RAASPASRPW  60
IDIHELTEGQ LAWGGREVDG WRKGPWTTQE DKLLVEHVQQ HGEGRWNSVS KHTGLKRSGK  120
SCRLRWVNYL RPDLKRGKIT PQEESIIVQL HALWGNRWST IARSLPGRTD NEIKNYWRTH  180
FKKGKPSKNI ERARARFLKQ RREMQIQQQQ QLQQLVSKVD ENTNHDDGAT RCGTLVEAED  240
RGSAVVDNAC AGTTAAAVTD QSSGQHHQAA APDLAMHDAM MDFMCPMSCG LLLHGAGAHQ  300
GGASAGSCCG STSEEYGSSE EDGATWGSLW NLEDVVGDGG GPGAYASGWA SEIDPNFPST  360
NDLHALNEVG EETEVDSERG GRELVARTSA HRLILRLPWW WWITTSEQPL PYFHFAAAAA  420
AGAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-278318327126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824833.11e-121transcription factor MYB8-like isoform X2
TrEMBLA0A3L6PVQ31e-124A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like
STRINGSi010822m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584