PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02846.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 380aa    MW: 40607.7 Da    PI: 8.3354
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02846.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161462148
                                    TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl
  Zmw_sc02846.1.g00110.1.sm.mkhc 14 KGPWSPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                    79*********************************************97 PP
2Myb_DNA-binding35.13e-1169111246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+ E+ ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Zmw_sc02846.1.g00110.1.sm.mkhc  69 GDFTEKEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                     789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.018966IPR017930Myb domain
SuperFamilySSF466893.68E-2611109IPR009057Homeodomain-like
SMARTSM007173.1E-131364IPR001005SANT/Myb domain
PfamPF002499.7E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-241569IPR009057Homeodomain-like
CDDcd001672.97E-101662No hitNo description
SMARTSM007173.7E-967115IPR001005SANT/Myb domain
PROSITE profilePS5129416.10367117IPR017930Myb domain
PfamPF002495.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTEKEEHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
RAPSRRARAN QSPYISTAAA GGNVCSTING NNNSASMASQ TLSASALERI QLHMRLQGLY  180
GAFGCAAGAG DSATAPQWPK LETMLTSMLR IPATEPVDAV ATTVSVHHQP QHVVDQSLAA  240
GRAVETEQLG STRATGYNNM PCSFERPGKP GFCSPSTTDA DASGLMVNGG YGGAGFGPHH  300
NDIYDLLYSK YGSMFGAGAQ GGGHIIPSLP ELQCPDGAAA IVGADEKFST WTTASCDYGQ  360
LQGNTIYGSL QDYALGGYDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792029.11e-167transcription factor CSA-like
SwissprotQ9FKL28e-85MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2T7FD291e-166A0A2T7FD29_9POAL; Uncharacterized protein
STRINGPavir.Ab03119.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]