PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02684.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 491aa    MW: 53361.8 Da    PI: 7.1111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02684.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rgrWT+eEde l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Zmw_sc02684.1.g00010.1.am.mk 14 RGRWTAEEDEVLASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                                  89******************************99************97 PP
2Myb_DNA-binding285.2e-092072302448
                                   HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  24 WktIartmgkgRtlkqcksrwqkyl 48 
                                   W++Ia++++ gRt++++k++w+++l
  Zmw_sc02684.1.g00010.1.am.mk 207 WSLIASHLP-GRTDNEIKNYWNSHL 230
                                   *********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-22569IPR009057Homeodomain-like
PROSITE profilePS5129422.044965IPR017930Myb domain
SMARTSM007172.8E-121363IPR001005SANT/Myb domain
PfamPF002492.1E-151461IPR001005SANT/Myb domain
SuperFamilySSF466897.89E-211588IPR009057Homeodomain-like
CDDcd001671.70E-101661No hitNo description
SMARTSM007178.5E-1066232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-177087IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-17206230IPR009057Homeodomain-like
SuperFamilySSF466894.02E-7206235IPR009057Homeodomain-like
PfamPF002491.1E-6207230IPR001005SANT/Myb domain
CDDcd001671.26E-6207230No hitNo description
PROSITE profilePS500906.632207230IPR017877Myb-like domain
PfamPF066404.3E-64248468IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEVLASYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADVKRGNI SKEEEDIIIK LHATLGNRAG RMESTAGGQL ASMVITADRL TEEPISINLL  120
GAVGARVRRV HSLLLLLLLA CHAVTLEATR VAHAWHGMAC SPDHLTPPSS RFVKYSGFTD  180
HRQGSVKRAV PSGVTFPLAR SLSVVPWSLI ASHLPGRTDN EIKNYWNSHL SRQIHTYRRI  240
YTAGNDTTIT IDITKLHSQE KRRGGRTPGR SRKSRDKITT SRGKRADPEP EPAEQSGKLE  300
KRVDASSPVA AMSSPPQSDD GARSAVVDPD GPNQRTNSVD VDGNTPGHGG PCSEDATGPV  360
EMEPLDIGLW EAESEMDMEA LLLSTTGTGS IGDGSGSFAT GLVDAVGEAP VDDLLDMDWD  420
GFAAHLWGDP GQNEQNDHRG TAQAAEPRAA AGCDPEPEEL ESFATWLLRT RRTCTHVSRR  480
FFVERHPGVS G
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797897.12e-72myb-related protein P-like
SwissprotP278987e-51MYBP_MAIZE; Myb-related protein P
TrEMBLA0A3L6TPG06e-77A0A3L6TPG0_PANMI; Myb-related protein P-like
STRINGPavir.Ib01420.1.p2e-74(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]