PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02354.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 446aa    MW: 49791 Da    PI: 7.2928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02354.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-15143191148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W+ eEd  l+++++++G+g +W + ++++g++R++k+c++rw++yl
  Zmw_sc02354.1.g00010.1.am.mk 143 KGPWSLEEDAMLKNYIEEHGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 191
                                   79*********************************************97 PP
2Myb_DNA-binding36.98.3e-12198240246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +T+eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
  Zmw_sc02354.1.g00010.1.am.mk 198 GDFTPEEDSVICSLYISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 240
                                   789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.793138191IPR017930Myb domain
SuperFamilySSF466893.39E-26141238IPR009057Homeodomain-like
SMARTSM007172.7E-12142193IPR001005SANT/Myb domain
PfamPF002493.1E-14143191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-22144198IPR009057Homeodomain-like
CDDcd001675.81E-9145191No hitNo description
PROSITE profilePS5129421.102192246IPR017930Myb domain
SMARTSM007171.3E-10196244IPR001005SANT/Myb domain
PfamPF002494.4E-10198240IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22199246IPR009057Homeodomain-like
CDDcd001674.96E-7200242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDHPELGFLT WGHSTAPQLT VDDLDWSPSI DRYLRWYAAV RGLQSTIAVQ VLVLDIIGTS  60
FGFNGDRWCP ISVVLPMTHC PSSSSSIVRG HPTPCPPNQT HHHSTAQSRL PEKRPPRRRE  120
RREKKRKTKM GRAPCCDKAT VKKGPWSLEE DAMLKNYIEE HGTGGNWIAL PHKIGLKRCG  180
KSCRLRWLNY LRPNIKHGDF TPEEDSVICS LYISIGSRWS IIAAQLPGRT DNDVKNYWNT  240
KLKKRLLGRR KDRPEAHRPS AAVVANETAA EMNDGERALS ASAMERIQLC MQLQELQNPL  300
GAAIQTPALT TWPASCRAAI QSNNSFNSNN SAGSSVTVAE PGQCSYVNDH HLNARLVESA  360
AMDGLASPSS AENSNVISIE AELQELLYGE ADQQLRAGAI DDGMQQQQQQ GDMDWWCYDQ  420
SKPVNCWDFT PEPNAVFQDY ASVYDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-211432467108B-MYB
3zqc_A2e-211432462103MYB3
3zqc_D2e-211432462103MYB3
3zqc_G2e-211432462103MYB3
3zqc_J2e-211432462103MYB3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126RREKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973097.11e-162transcription factor MYB36
TrEMBLA0A2T7D5E81e-161A0A2T7D5E8_9POAL; Uncharacterized protein
TrEMBLA0A3L6PR861e-161A0A3L6PR86_PANMI; Transcription factor RAX2-like
TrEMBLK3YMV21e-161K3YMV2_SETIT; Uncharacterized protein
STRINGSi015585m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412