PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02176.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 251aa    MW: 27930.5 Da    PI: 7.1172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02176.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-161461148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g+WT+eEd+ lv  ++++G  +W++ ++  g+ R++k+c++rw +yl
  Zmw_sc02176.1.g00140.1.sm.mkhc 14 KGPWTPEEDKVLVAHIQRFGHSNWRALPKQAGLLRCGKSCRLRWINYL 61
                                    79******************************99************97 PP
2Myb_DNA-binding55.41.4e-1767112148
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Zmw_sc02176.1.g00140.1.sm.mkhc  67 RGNFTKEEEETIIQLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129414.667961IPR017930Myb domain
SuperFamilySSF466893.67E-3010108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002493.9E-141461IPR001005SANT/Myb domain
CDDcd001671.50E-91661No hitNo description
PROSITE profilePS5129425.44862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-2665116IPR009057Homeodomain-like
SMARTSM007179.3E-1666114IPR001005SANT/Myb domain
PfamPF002492.4E-1667112IPR001005SANT/Myb domain
CDDcd001671.02E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPE EDKVLVAHIQ RFGHSNWRAL PKQAGLLRCG KSCRLRWINY  60
LRSDIKRGNF TKEEEETIIQ LHELLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLEPTK  120
QDHAPAAGAS KKKQKRAGAK KTPEEVSAAA APVSPERSFS SSVTESSMTE QGKTGSSGFS  180
KDESFTSSEE FQIDDSFWSE ALSMPLESFD VPMDESFGVP VGTSSAGGAE DMDYWVKLFM  240
ETDGVQELPL I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448188.11e-118transcription factor MYB4
SwissprotQ7XBH41e-105MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A1D8F0K41e-126A0A1D8F0K4_9POAL; MYB protein
STRINGSb06g022660.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]