PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02101.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 362aa    MW: 39413.5 Da    PI: 6.3873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02101.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-1457125148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....................TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....................kgRtlkqcksrwqkyl 48 
                                   rg+WT +Ed+ lv++v+ +G g+W++ a+t g                     ++Rt+k+c++rw++yl
  Zmw_sc02101.1.g00040.1.am.mk  57 RGPWTVDEDLALVNYVAAHGEGRWNSLAATAGtyvlafslcfsslanaaiytgLKRTGKSCRLRWLNYL 125
                                   89*****************************************************************97 PP
2Myb_DNA-binding55.71.2e-17131174146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg++T++E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Zmw_sc02101.1.g00040.1.am.mk 131 RGNFTADEQMLILDLHSRYGNR-WSKIAQHLP-GRTDNEIKNYWRT 174
                                   89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.53952125IPR017930Myb domain
SMARTSM007176.8E-1056127IPR001005SANT/Myb domain
SuperFamilySSF466895.88E-2756172IPR009057Homeodomain-like
PfamPF002491.7E-1257125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2158132IPR009057Homeodomain-like
CDDcd001675.02E-859125No hitNo description
PROSITE profilePS5129423.832126180IPR017930Myb domain
SMARTSM007171.8E-16130178IPR001005SANT/Myb domain
PfamPF002494.8E-16131174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-25133179IPR009057Homeodomain-like
CDDcd001673.87E-13133174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLNRSTSNSN SNMASSPHSS HSATAPAPAT DALFARSSGV AVDVDGGAGQ KDQLIRRGPW  60
TVDEDLALVN YVAAHGEGRW NSLAATAGTY VLAFSLCFSS LANAAIYTGL KRTGKSCRLR  120
WLNYLRPDVK RGNFTADEQM LILDLHSRYG NRWSKIAQHL PGRTDNEIKN YWRTRVQKHA  180
KQLNCDANSK RFKDAMRYLW MPHLVDGHCH HLHAADHQQQ ATATAANHDG YYHAATALSA  240
GAMGVPSSSS DSFATTTSES YEYDAGFPPN WEPSSCYDSA AAGGLYAGEM LMPGGGGDCW  300
VQETSQQQAG MMWPEEQKAA VGVNGGQFED AELSGWVQSF SEAGATAENT SFWTLEDVWK  360
TQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-22541781103C-Myb DNA-Binding Domain
1msf_C6e-22541781103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962755.11e-111transcription factor JAMYB
TrEMBLK3Z8G11e-109K3Z8G1_SETIT; Uncharacterized protein
STRINGPavir.Cb00499.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330